View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5095_high_3 (Length: 324)
Name: NF5095_high_3
Description: NF5095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5095_high_3 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 147 - 324
Target Start/End: Complemental strand, 39901659 - 39901482
Alignment:
| Q |
147 |
catttgattaattagattttggccgacctatacatgaaagagaagtgattattattattttaaagtgtaatatgccatcatgcatgatttcctgtctttt |
246 |
Q |
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| T |
39901659 |
catttaattaattagattttggccgacctatacatgaaagagaagtgattattattattttttagtgtactatgccatcatgcatgatttcctgtctttt |
39901560 |
T |
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| Q |
247 |
ttgttaaacttctatagtataataaaaacatctttcttaatgataatacatgtataaaagggttttgctgctgttaac |
324 |
Q |
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| T |
39901559 |
ttgttaaacttctatagtataataaaaacatctttcttaatgataatacatgtataaaagggttttgctgctgttaac |
39901482 |
T |
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Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 39901795 - 39901734
Alignment:
| Q |
11 |
cagagaatccattctgaacccactaacaaacatgcaacaaaattcccactaagcttctttct |
72 |
Q |
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| T |
39901795 |
cagagaatccattctgaacccactaacaagcatgcaacaaaattcccactaaacttttttct |
39901734 |
T |
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