View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5095_high_7 (Length: 301)

Name: NF5095_high_7
Description: NF5095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5095_high_7
NF5095_high_7
[»] chr1 (6 HSPs)
chr1 (1-282)||(7440782-7441063)
chr1 (77-262)||(6397661-6397845)
chr1 (200-248)||(42517120-42517168)
chr1 (200-274)||(41941063-41941137)
chr1 (59-116)||(41941204-41941261)
chr1 (67-116)||(28666889-28666938)
[»] chr8 (4 HSPs)
chr8 (59-240)||(14958005-14958188)
chr8 (161-269)||(4490295-4490403)
chr8 (59-151)||(15292544-15292635)
chr8 (59-151)||(15472913-15473004)
[»] chr5 (5 HSPs)
chr5 (74-228)||(7237068-7237224)
chr5 (64-243)||(19340568-19340745)
chr5 (59-240)||(41715034-41715215)
chr5 (61-103)||(38755750-38755792)
chr5 (97-274)||(19276885-19277062)
[»] scaffold0035 (1 HSPs)
scaffold0035 (75-243)||(24399-24568)
[»] chr6 (2 HSPs)
chr6 (59-267)||(1415476-1415683)
chr6 (63-151)||(33908568-33908656)
[»] chr3 (3 HSPs)
chr3 (59-151)||(8543111-8543205)
chr3 (76-149)||(8541441-8541515)
chr3 (82-135)||(11630117-11630170)
[»] chr4 (4 HSPs)
chr4 (74-243)||(865245-865414)
chr4 (59-135)||(3284091-3284166)
chr4 (207-272)||(36010202-36010267)
chr4 (179-273)||(3284201-3284295)
[»] scaffold0027 (1 HSPs)
scaffold0027 (125-158)||(43667-43700)
[»] chr7 (2 HSPs)
chr7 (189-262)||(24447163-24447236)
chr7 (60-116)||(15077096-15077152)
[»] scaffold0154 (1 HSPs)
scaffold0154 (200-243)||(19342-19385)
[»] chr2 (1 HSPs)
chr2 (59-135)||(31395143-31395218)


Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 7441063 - 7440782
Alignment:
Q  1 ctaaaaaatttcaatgaacaaacatgttccggtacaccaaaatacttacattgtttacgttagaacaacatctagtaacataagattaaataagagaacg 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  7441063 ctaaaaaatttcaatgaccaaacatgttccggtacaccaaaatacttacattgcttatgttagaacaacatctagtaacataagattaaataagagaacg 7440964  T
Q  101 aaaataaaagacaatgcatatacgatatttgttaatgcaattcggccaattatgtttacttctgcaaccatagagcggttatagttttgtttttattatt 200  Q
    ||| ||||| |||||  |||||||||||||||||| ||| ||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||    
T  7440963 aaagtaaaaaacaatatatatacgatatttgttaacgcagttcggccaattatatttacttctgcgactatagagcggttatagttttgtttttattatt 7440864  T
Q  201 gtgatgaattagagtttcggtgttacaaacaatatatatagtattactgctatgattcagttaacaatattacctctgatga 282  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  7440863 gtgatgaattagagtttcggtgttacaaacaatatatataatattactactatgattcagttaacaatattacctctgatga 7440782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 77 - 262
Target Start/End: Original strand, 6397661 - 6397845
Alignment:
Q  77 aacataagattaaataagagaacgaaaataaaagacaatgcatatacgatatttgttaatgcaattcggccaattatgtttacttctgcaaccatagagc 176  Q
    ||||||||||||||||||||||| ||| ||||| |||| | | |||| ||||||||||| ||| |||||||| || ||  ||| ||||  || |||||||    
T  6397661 aacataagattaaataagagaaccaaagtaaaacacaacgaacatacaatatttgttaacgcacttcggcca-ttgtgcctacctctgtgactatagagc 6397759  T
Q  177 ggttatagttttgtttttattattgtgatgaattagagtttcggtgttacaaacaatatatatagtattactgctatgattcagtt 262  Q
     | ||||||||||||| ||||| ||||||||| ||  ||||| ||||||||| ||||||||||||||||| | |||||||||||||    
T  6397760 agctatagttttgtttctattactgtgatgaactaaggtttcagtgttacaagcaatatatatagtattattactatgattcagtt 6397845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 200 - 248
Target Start/End: Complemental strand, 42517168 - 42517120
Alignment:
Q  200 tgtgatgaattagagtttcggtgttacaaacaatatatatagtattact 248  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  42517168 tgtgatgaattagggtttcggtgttacaaacaatatatatagtactact 42517120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 274
Target Start/End: Complemental strand, 41941137 - 41941063
Alignment:
Q  200 tgtgatgaattagagtttcggtgttacaaacaatatatatagtattactgctatgattcagttaacaatattacc 274  Q
    ||||||||||||| |||||  ||||||||  |||||||||| || |||| ||| ||||||||| |||||||||||    
T  41941137 tgtgatgaattagggtttcaatgttacaagtaatatatatactactactactacgattcagtttacaatattacc 41941063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 41941261 - 41941204
Alignment:
Q  59 gttagaacaacatctagtaacataagattaaataagagaacgaaaataaaagacaatg 116  Q
    |||| ||||||  ||||||||| |||||||||||||||||| ||||||||||| ||||    
T  41941261 gttaaaacaacgactagtaacagaagattaaataagagaacaaaaataaaagataatg 41941204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 28666938 - 28666889
Alignment:
Q  67 aacatctagtaacataagattaaataagagaacgaaaataaaagacaatg 116  Q
    |||| ||||||||| ||||||||||||||||||||||   ||||||||||    
T  28666938 aacaactagtaacaaaagattaaataagagaacgaaagagaaagacaatg 28666889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 8e-24; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 59 - 240
Target Start/End: Complemental strand, 14958188 - 14958005
Alignment:
Q  59 gttagaacaacatctagtaacataagattaaataagagaacgaaaataaaagacaatgcatatacgatatttgttaatgcaattcggccaattatgttta 158  Q
    |||||||||||| ||||||||| ||||||||| ||||||||||||    ||||||||| | ||| ||||||||||||  || ||||||||||| ||  ||    
T  14958188 gttagaacaacaactagtaacaaaagattaaacaagagaacgaaagaggaagacaatgaacataggatatttgttaacacagttcggccaattgtgccta 14958089  T
Q  159 cttctgcaaccatagagcggttatagttttgtttttattattgt--gatgaattagagtttcggtgttacaaacaatatatata 240  Q
    | ||||| |  ||||||| | ||||||| ||||| ||||| |||  || ||||||| ||||| ||||||||| |||||||||||    
T  14958088 cctctgcgattatagagcagctatagttatgtttctattactgtgagaagaattagggtttcagtgttacaagcaatatatata 14958005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 161 - 269
Target Start/End: Complemental strand, 4490403 - 4490295
Alignment:
Q  161 tctgcaaccatagagcggttatagttttgtttttattattgtgatgaattagagtttcggtgttacaaacaatatatatagtattactgctatgattcag 260  Q
    ||||| || ||||||| |||||||| |||||| ||||||| ||||||||||  ||||| ||||| ||  |||||||||||||| |||   ||||||||||    
T  4490403 tctgcgactatagagcagttatagtcttgtttgtattattatgatgaattaaggtttcagtgttgcatgcaatatatatagtaatacaattatgattcag 4490304  T
Q  261 ttaacaata 269  Q
    || ||||||    
T  4490303 tttacaata 4490295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 151
Target Start/End: Original strand, 15292544 - 15292635
Alignment:
Q  59 gttagaacaacatctagtaacataagattaaataagagaacgaaaataaaagacaatgcatatacgatatttgttaatgcaattcggccaatt 151  Q
    |||||||||||| |  |||| | |||||||||||||||||||||| ||||||  |||| | | |||||| ||||||| ||| |||| ||||||    
T  15292544 gttagaacaacaaccggtaagagaagattaaataagagaacgaaagtaaaagttaatgaacacacgata-ttgttaacgcagttcgaccaatt 15292635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 151
Target Start/End: Original strand, 15472913 - 15473004
Alignment:
Q  59 gttagaacaacatctagtaacataagattaaataagagaacgaaaataaaagacaatgcatatacgatatttgttaatgcaattcggccaatt 151  Q
    |||||||||||| |  |||| | |||||||||||||||||||||| ||||||  |||| | | |||||| ||||||| ||| |||| ||||||    
T  15472913 gttagaacaacaaccggtaagagaagattaaataagagaacgaaagtaaaagttaatgaacacacgata-ttgttaacgcagttcgaccaatt 15473004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 74 - 228
Target Start/End: Original strand, 7237068 - 7237224
Alignment:
Q  74 agtaacataagattaaataagagaacgaaaataaaagacaatgcatatacgatatttgttaatgcaattcggccaattatgtttacttctgcaaccatag 173  Q
    ||||||| ||||||||||||||||||||||  ||||||||||| | | |||||||||||||  ||| ||||||||||| ||| ||| |||||  | ||||    
T  7237068 agtaacaaaagattaaataagagaacgaaagaaaaagacaatgaacacacgatatttgttaccgcagttcggccaattttgtctacctctgcggctatag 7237167  T
Q  174 agcggttatagttttgtttttattattgtgat--gaattagagtttcggtgttacaa 228  Q
    ||| | |||| ||   ||||||||| ||||||  ||||||| |||||||||||||||    
T  7237168 agcagctataattccatttttattactgtgataagaattagggtttcggtgttacaa 7237224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 64 - 243
Target Start/End: Complemental strand, 19340745 - 19340568
Alignment:
Q  64 aacaacatctagtaacataagattaaataagagaacgaaaataaaagacaatgcatatacgatatttgttaatgcaattcggccaattatgtttacttct 163  Q
    ||||||| |||||||||  ||||||| ||||| || ||||||||||| ||||| | || | |||||| |||||||| || || ||||  || |||| |||    
T  19340745 aacaacaactagtaacagtagattaa-taaga-aatgaaaataaaaggcaatgaacattccatatttattaatgcagtttggtcaatggtgcttacctct 19340648  T
Q  164 gcaaccatagagcggttatagttttgtttttattattgtgatgaattagagtttcggtgttacaaacaatatatatagta 243  Q
    || || ||||||| | ||||||||  ||||||||  | ||||||||||||||||  ||||||||| ||||||||||||||    
T  19340647 gcgactatagagcagatatagtttcatttttattgatatgatgaattagagtttaagtgttacaagcaatatatatagta 19340568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 240
Target Start/End: Complemental strand, 41715215 - 41715034
Alignment:
Q  59 gttagaacaacatctagtaacataagattaaataagagaacgaaaataaaagacaatgcatatacgatatttgttaatgcaattcggccaattatgttta 158  Q
    ||||| |||||| ||||||||| ||||||||||||||||||||||   |||||||||  | |||||||  ||||||||||| ||||| ||||| ||  ||    
T  41715215 gttagcacaacaactagtaacaaaagattaaataagagaacgaaagagaaagacaattaacatacgat-cttgttaatgcagttcggacaattgtgccta 41715117  T
Q  159 cttctgcaaccatagagcggttatagttttgtttttattattgtgatga-attagagtttcggtgttacaaacaatatatata 240  Q
    | ||| | || |||||||   |||||||  |||| ||||| |||||||| | ||| | ||| ||||||||| |||||||||||    
T  41715116 cctctacgacgatagagcatctatagttccgtttctattactgtgatgagaataggggttcagtgttacaagcaatatatata 41715034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 103
Target Start/End: Complemental strand, 38755792 - 38755750
Alignment:
Q  61 tagaacaacatctagtaacataagattaaataagagaacgaaa 103  Q
    |||||||||| ||||||||| ||||||||||||||||||||||    
T  38755792 tagaacaacaactagtaacaaaagattaaataagagaacgaaa 38755750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 274
Target Start/End: Complemental strand, 19277062 - 19276885
Alignment:
Q  97 aacgaaaataaaagacaatgcatatacgatatttgttaatgcaattcggccaattatgtttacttctgcaaccatagagcggttatagttttgtttttat 196  Q
    ||||||||||||| |||||| | | ||||| ||| ||||  |||||||| |||| ||||||||   ||  || ||||| |   |||||||| |||| |||    
T  19277062 aacgaaaataaaaaacaatgaacacacgatctttattaactcaattcggtcaatgatgtttaccgttgtgactatagatcaactatagtttcgtttgtat 19276963  T
Q  197 tattgtgatgaattagagtttcggtgttacaaacaatatatatagtattactgctatgattcagttaacaatattacc 274  Q
    || |||||||| |||| |||||  |||||| | ||||||||||||||  | | ||| ||||||| | |||||||||||    
T  19276962 tactgtgatgatttagggtttcaatgttactagcaatatatatagtacaattactacgattcagattacaatattacc 19276885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 75 - 243
Target Start/End: Complemental strand, 24568 - 24399
Alignment:
Q  75 gtaacataagattaaataagagaacgaaaataaaagacaatgcatatacgatatttgttaatgcaattcggccaattatgtttacttctgcaaccataga 174  Q
    |||||| |||||||||||||||||| ||| |||||||||||| | | |||||  ||||||| |  |||||||||||||||  ||| ||||| || |||||    
T  24568 gtaacagaagattaaataagagaacaaaagtaaaagacaatgaaaacacgat-cttgttaaagttattcggccaattatgcctacctctgcgactataga 24470  T
Q  175 gcggttatagttttgtttttattattgtgat--gaattagagtttcggtgttacaaacaatatatatagta 243  Q
    || | | |||||  |||| |||||  |||||  || |||||||||||||||||||| |||||| |||||||    
T  24469 gcagctgtagttccgtttctattacagtgataagacttagagtttcggtgttacaagcaatatctatagta 24399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 267
Target Start/End: Complemental strand, 1415683 - 1415476
Alignment:
Q  59 gttagaacaacatctagtaacataagattaaataagagaacgaaa-ataaaagacaatgcatatacgatatttgttaatgcaattcggccaattatgttt 157  Q
    |||||||||| | ||| ||||| |||||||| ||||||||||||| | ||||||||||  ||| |||||| ||||||| ||| ||||||||||| ||  |    
T  1415683 gttagaacaaaaactaataacaaaagattaa-taagagaacgaaagagaaaagacaataaatacacgatacttgttaacgcagttcggccaattgtggct 1415585  T
Q  158 acttctgcaaccatagagcggttatagttttgtttttattattgtgat--gaattagagtttcggtgttacaaacaatatatatagtattactgctatga 255  Q
    || ||| | |  ||||||| | ||||||| ||||| ||||||||||||  ||||||| |||||  ||||||||    |||||||||   |||| ||||||    
T  1415584 acctctacgattatagagcagctatagttctgtttctattattgtgataagaattagggtttcaatgttacaagttgtatatatag---tactactatga 1415488  T
Q  256 ttcagttaacaa 267  Q
    ||||||| ||||    
T  1415487 ttcagtttacaa 1415476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 151
Target Start/End: Original strand, 33908568 - 33908656
Alignment:
Q  63 gaacaacatctagtaacataagattaaataagagaacgaaaataaaagacaatgcatatacgatatttgttaatgcaattcggccaatt 151  Q
    ||||| || ||||||||| || |||||||||||||||||||   |||||||||| | | | |||||||||||| ||| |||| ||||||    
T  33908568 gaacagcaactagtaacaaaatattaaataagagaacgaaagagaaagacaatgaacacatgatatttgttaacgcagttcgaccaatt 33908656  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 151
Target Start/End: Complemental strand, 8543205 - 8543111
Alignment:
Q  59 gttagaacaacatc-tagtaacataagattaaataagagaacgaaaata-aaagacaatgcatatacgatatttgttaatgcaattcggccaatt 151  Q
    |||||||||||| | || ||||| ||||||||||||||||||||| | | |||||||||| | |||||||||||||||| ||| |||||||||||    
T  8543205 gttagaacaacaacatattaacaaaagattaaataagagaacgaagaaagaaagacaatgaacatacgatatttgttaacgcagttcggccaatt 8543111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 149
Target Start/End: Complemental strand, 8541515 - 8541441
Alignment:
Q  76 taacataagattaaataagagaacgaaaata-aaagacaatgcatatacgatatttgttaatgcaattcggccaa 149  Q
    ||||| ||||||||||||||||||||| | | |||||||| ||| | |||||||||||||| ||| |||||||||    
T  8541515 taacaaaagattaaataagagaacgaagagagaaagacaacgcacacacgatatttgttaacgcagttcggccaa 8541441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 135
Target Start/End: Complemental strand, 11630170 - 11630117
Alignment:
Q  82 aagattaaataagagaacgaaaataaaagacaatgcatatacgatatttgttaa 135  Q
    |||||||||||||||||| |||  |||||||||||   ||||||||||||||||    
T  11630170 aagattaaataagagaacaaaagaaaaagacaatgatcatacgatatttgttaa 11630117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 74 - 243
Target Start/End: Original strand, 865245 - 865414
Alignment:
Q  74 agtaacataagattaaataagagaacgaaaataaaagacaatgcatatacgatatttgttaatgcaattcggccaattatgtttacttctgcaaccatag 173  Q
    ||||||| || ||||||||||||||||||| ||||||| |||| | | |||||||||||||| |   ||||  ||||| ||||||  ||| | || ||||    
T  865245 agtaacaaaaaattaaataagagaacgaaagtaaaagaaaatgaaaacacgatatttgttaacgtggttcgatcaattgtgtttatctctacgactatag 865344  T
Q  174 agcggttatagttttgtttttattattgtgatgaattagagtttcggtgttacaaacaatatatatagta 243  Q
    ||  | |||| ||  |||| |||| ||||||| ||||||||||||  | |||| ||||||||||||||||    
T  865345 agtagctataattccgtttctattgttgtgataaattagagtttcaatattacgaacaatatatatagta 865414  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 135
Target Start/End: Original strand, 3284091 - 3284166
Alignment:
Q  59 gttagaacaacatctagtaacataagattaaataagagaacgaaaataaaagacaatgcatatacgatatttgttaa 135  Q
    ||||||||||||  || |||||||||||||||||| ||| ||||| |||||||||||| | ||||||||||||||||    
T  3284091 gttagaacaacaa-tactaacataagattaaataaaagaccgaaagtaaaagacaatgaacatacgatatttgttaa 3284166  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 36010267 - 36010202
Alignment:
Q  207 aattagagtttcggtgttacaaacaatatatatagtattactgctatgattcagttaacaatatta 272  Q
    ||||| ||||||  |||||||||||||||||||| || |||| ||| ||||||||| |||||||||    
T  36010267 aattaaagtttcaatgttacaaacaatatatataatactacttctacgattcagttcacaatatta 36010202  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 273
Target Start/End: Original strand, 3284201 - 3284295
Alignment:
Q  179 ttatagttttgtttttattattgtgatgaattagagtttcggtgttacaaacaatatatatagtattactgctatgattcagttaacaatattac 273  Q
    ||||||||  |||||||||| ||||||||||||| ||||  | ||||||| ||| ||||||| || |||| |||  ||| |||| ||||||||||    
T  3284201 ttatagttccgtttttattactgtgatgaattagggttttagcgttacaagcaaaatatatattactactactacaattaagtttacaatattac 3284295  T

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Target: scaffold0027 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 158
Target Start/End: Original strand, 43667 - 43700
Alignment:
Q  125 atatttgttaatgcaattcggccaattatgttta 158  Q
    ||||||||||||||||||||||||||||||||||    
T  43667 atatttgttaatgcaattcggccaattatgttta 43700  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 262
Target Start/End: Complemental strand, 24447236 - 24447163
Alignment:
Q  189 gtttttattattgtgatgaattagagtttcggtgttacaaacaatatatatagtattactgctatgattcagtt 262  Q
    |||| ||||| ||||||||||| ||||||| || |||||| ||||| ||||| || |||||||| |||||||||    
T  24447236 gtttgtattactgtgatgaatttgagtttcagtattacaagcaatacatataatactactgctacgattcagtt 24447163  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 15077096 - 15077152
Alignment:
Q  60 ttagaacaacatctagtaacataagattaaataagagaacgaaaataaaagacaatg 116  Q
    ||||||| ||| |||||||||  ||||||||||||||||||||| ||||| ||||||    
T  15077096 ttagaacgacaactagtaacaacagattaaataagagaacgaaagtaaaaaacaatg 15077152  T

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Target: scaffold0154 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 200 - 243
Target Start/End: Complemental strand, 19385 - 19342
Alignment:
Q  200 tgtgatgaattagagtttcggtgttacaaacaatatatatagta 243  Q
    ||||||||||||| |||||  |||||||||||||||||||||||    
T  19385 tgtgatgaattagggtttcactgttacaaacaatatatatagta 19342  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 135
Target Start/End: Original strand, 31395143 - 31395218
Alignment:
Q  59 gttagaacaacatctagtaacataagattaaataagagaacgaaaataaaagacaatgcatatacgatatttgttaa 135  Q
    |||||| ||||| ||||||||| || || |||||||| ||||||| |||||||||||| | | | ||||||||||||    
T  31395143 gttagagcaacaactagtaacaaaatat-aaataagaaaacgaaagtaaaagacaatgaacacatgatatttgttaa 31395218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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