View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5096-Insertion-1 (Length: 1060)
Name: NF5096-Insertion-1
Description: NF5096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5096-Insertion-1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 677; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 677; E-Value: 0
Query Start/End: Original strand, 118 - 868
Target Start/End: Complemental strand, 44270514 - 44269767
Alignment:
| Q |
118 |
ttcatgtcaaacacaaacacaaacatggttattctttttcttctctttctagtaacactcttaaccattccaaccccatcaatctctgatacaaactctt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44270514 |
ttcatgtcaaacacaaacacaaacatggtt---ctttttcttctctttctagtaacactcttaaccattccaaccccatcaatctctgatacaaactctt |
44270418 |
T |
|
| Q |
218 |
tcatcttcggtggttgttctcgtttcaaatactcatcaggttcctcctacgagaacagtgtgaactcaatcctcacttccttagtcaactcagcggcctt |
317 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
44270417 |
tcatctttggtggttgttctcgtttcaaatactcaccaggttcctcctacgagaacagtgtgaactcaatcctcacttccttagtcaactcagcagcctt |
44270318 |
T |
|
| Q |
318 |
ttcaaactacaacaatttcacagttcccggctccgcggagtcggaaaccatctacggcctttcccagtgccgtggagaccttaacaatgatcaatgttca |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
44270317 |
ttcaaactacaacaatttcacagttcccggctccacggagtcggaaaccatctacggcctttcccagtgccgtggtgaccttaacaatgatcaatgttca |
44270218 |
T |
|
| Q |
418 |
cgttgcgtggggcgtgcggtgagtcaactagggacactctgtttcgccacctacggtggcgcgttgcagctcgaaggttgttttgtgaaatacgataatc |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44270217 |
cgttgcgtggggcgtgcggtgagtcaactagggacactctgtttcgctacctacggtggcgcgttgcagctcgaaggttgttttgtgaaatacgataatc |
44270118 |
T |
|
| Q |
518 |
taacgttttttggggtacaagacaagacagaagtggtgaagaaatgtggaccgtcgattgggttgacttctgatgcgtttactagaagggatgctgtgct |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44270117 |
taacgttttttggggtacaagacaagacagaagtggtgaagaaatgtggaccgtcgattgggttgacttctgatgcgtttactagaagggatgctgtgct |
44270018 |
T |
|
| Q |
618 |
ggcttatttacagtcgtccgatnnnnnnnnttataaaaattttaggacaagttcggctgaggattttcaaggtgtggcgcagtgtacgggggatttgagt |
717 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44270017 |
ggcttatttacagtcgtccgatggggggggttataaaaattttaggacaagttcggctgaggattttcaaggtgtggcgcagtgtacgggggatttgagt |
44269918 |
T |
|
| Q |
718 |
tatagtaagtgtcaggattgtgtttctggggcaatccaacggttgaaaacggagtgtggtgattctacttggggtgatatgtatttggctaaatgctacg |
817 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
44269917 |
tatagtaagtgtcaggattgtgtttctgaggcaatccaacggttgaaaacggagtgtggtgattctacttggggcgatatgtatttggctaaatgctacg |
44269818 |
T |
|
| Q |
818 |
tgcgttattcagaaggtggtgttcactcgcgtggtagtaataacggtatgt |
868 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44269817 |
tgcgttattccgaaggtggtgttcactcgcgtggtagtaataacggtatgt |
44269767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 881 - 988
Target Start/End: Complemental strand, 44269728 - 44269618
Alignment:
| Q |
881 |
tttaatcaacaagtgttctattaaaaacttgaattcatgctgaaatttgatttcgtacacgtttg-attgatg-ctaaatttaaaattgtcataatc-at |
977 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||| |||||||||||||||||| |||| || |
|
|
| T |
44269728 |
tttaatcaataagtgttctattaaaaacttgaattcatgctgaaaattgatttcgtacatgtttgaattgatgcctaaatttaaaattgtcaaaatcaat |
44269629 |
T |
|
| Q |
978 |
gtgatctacta |
988 |
Q |
| |
|
|| |||||||| |
|
|
| T |
44269628 |
gtcatctacta |
44269618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 122
Target Start/End: Complemental strand, 44270562 - 44270522
Alignment:
| Q |
81 |
agtaacactcactctacaagaaaacaaaaacactttcttcat |
122 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
44270562 |
agtaaccctcactctacaagaaaac-aaaacactttcttcat |
44270522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University