View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5096-Insertion-2 (Length: 995)
Name: NF5096-Insertion-2
Description: NF5096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5096-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 45; Significance: 4e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 929 - 984
Target Start/End: Complemental strand, 3427628 - 3427572
Alignment:
| Q |
929 |
tgcagaacagaaccagcacatcaccacaacaccaacatctctat-ttaggtcatctc |
984 |
Q |
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| T |
3427628 |
tgcataacagaaccagcacatcaccacaacaccaacatctctatgttaggtcatctc |
3427572 |
T |
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Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 797 - 844
Target Start/End: Complemental strand, 3427760 - 3427713
Alignment:
| Q |
797 |
ttttcttccctcttctatctcactacacacacgcacaacacaaactga |
844 |
Q |
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| T |
3427760 |
ttttcttccatcttctatctcactacacacacgcacaacacaaactga |
3427713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 723 - 795
Target Start/End: Complemental strand, 29235475 - 29235403
Alignment:
| Q |
723 |
aaaatgtgcttgcggcgaggaatacaaagttgtattgaataaatagttgcagtgtacttgaacatgcaaactt |
795 |
Q |
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| T |
29235475 |
aaaatgtgcctgtggtgaggaatacaaagttgcattgaatacacagctgcagtgtacttgaacatgaaaactt |
29235403 |
T |
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