View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5096-Insertion-3 (Length: 990)
Name: NF5096-Insertion-3
Description: NF5096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5096-Insertion-3 |
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Alignment Details
Target: chr7 (Bit Score: 543; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 5 - 584
Target Start/End: Original strand, 45037360 - 45037938
Alignment:
| Q |
5 |
acaatcttgttcttgctatgttatggcgtcaccctgaaaatgttgagcttcataaagtcaaggttgttcactattgtgcagcggtaagtaatgcaatgca |
104 |
Q |
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| T |
45037360 |
acaatcttgttcttgctatgttatggcgtcaccctgaaaatgttgagcttcataaagtcaaggttgttcactattgtgcagcggtaagtaatgcaatgca |
45037459 |
T |
|
| Q |
105 |
tattttgatttattgattgtgtgaataaatttgaagtgcataaatttttacagtgacttgatttttcgattttgttcagggatcaaagccttggagatac |
204 |
Q |
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| T |
45037460 |
tattttgatttattgattgtgtgaataaatttgaagtgcataaatttttacagtgacttgatttttcgattttgttcagggatcaaagccttggagatac |
45037559 |
T |
|
| Q |
205 |
acagggaaggaagaaaacatgcaaagggaggatataagaatgctagtcaagaaatggtgggatatttacaatgattcatctcttgattacaacaagaatt |
304 |
Q |
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| T |
45037560 |
acagggaaggaagaaaacatgcaaagggaggatataagaatgctagtcaagaaatggtgggatatttacaatgattcatctcttgattacaacaagaatt |
45037659 |
T |
|
| Q |
305 |
tgagtggaagtggtgaagtacaaacgaatggttttgaaattgagccattcgtacaagcattgtctgaggtaggtcgtgttcaatatgtcacagcaccttc |
404 |
Q |
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| T |
45037660 |
tgagtggaagtggtgaagtacaaacgaatggttttgaaattgagccattcgtacaagcattgtctgaggtaggtcgtgttcaatatgtcacagcaccttc |
45037759 |
T |
|
| Q |
405 |
agcagcttaaactgagctgttttttggtgaccattcattcgtgcaatggaagcaaaaacataaaaaatgaagtaaggaataacgatggaaattattatgg |
504 |
Q |
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| T |
45037760 |
agcagcttaaactgagctgttttttggtgaccattcattcgtgcaatggaagcaaaaacataaaaaatgaagtaaggaataacgatggaaattattatgg |
45037859 |
T |
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| Q |
505 |
aagtgagtaaaaaagtttaggtgcaaccgttctagaannnnnnncaagaccaggggaaatggttggtgctatatttcagc |
584 |
Q |
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| T |
45037860 |
aagtgagt-aaaaagtttaggtgcaaccgttcaagaatttttttcaagacaaggggaaatggttggtgctatatttcagc |
45037938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 660 - 983
Target Start/End: Original strand, 45038014 - 45038330
Alignment:
| Q |
660 |
ctggcttgtaattttcaaatatgtacattatgttcttgnnnnnnnnnnnngattctgttgttggtttttgtaatatatatcaagggtaattgcttcgttg |
759 |
Q |
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| T |
45038014 |
ctggcttgtaattttcaaatatgtacattatgttcttgttttttatttttgattctgttgttggtttttgtaatatatatcaagggcaattgcttcgttg |
45038113 |
T |
|
| Q |
760 |
taaagggaaatgtgaatcatgaaatgcaaatgcgatggaattttattgtgtaaagggtctcttgtctatttcatgtgaaaatgtgggaagttttctatgt |
859 |
Q |
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| T |
45038114 |
taaagggaaatgtgaatcatgaaatgcaaatgcgatggaattttattgtgtaaagggtctcttgtctatttcatgtgaaattgtgggaagttttctatgt |
45038213 |
T |
|
| Q |
860 |
ctatattgatctcggtcaattttgaagggtggattgttgcttagcaaagaaattaaatgtcttttatattatcg-aaaagaaaacatttgtcgttttaat |
958 |
Q |
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| T |
45038214 |
ctatattga--tcggtcaatttagaagggtggattgttgcttagcaaag-----aaatgtcttttatattatcgaaaaagaaaaca-ttgtcgttttaat |
45038305 |
T |
|
| Q |
959 |
tattggcaaattaaataatgacctt |
983 |
Q |
| |
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| T |
45038306 |
tactggcaaattaaataatgacctt |
45038330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 20395277 - 20395365
Alignment:
| Q |
5 |
acaatcttgttcttgctatgttatggcgtcaccctgaaaatgttgagcttcataaagtcaaggttgttcactattgtgcagcggtaagt |
93 |
Q |
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| T |
20395277 |
acaatcttgtgctggccatgttgtggcgtcatcctgagaatgttgaacttgagaaagtcaaagttgttcattactgtgcagcggtaagt |
20395365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 37686983 - 37686915
Alignment:
| Q |
22 |
atgttatggcgtcaccctgaaaatgttgagcttcataaagtcaaggttgttcactattgtgcagcggta |
90 |
Q |
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| T |
37686983 |
atgttgtggcgtcaccctgagaatgttgaacttgagaaagtcaaagttgttcattactgtgcagcggta |
37686915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 37698535 - 37698603
Alignment:
| Q |
22 |
atgttatggcgtcaccctgaaaatgttgagcttcataaagtcaaggttgttcactattgtgcagcggta |
90 |
Q |
| |
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||||| |||||||||||||| |||||||| ||| | |||||||| |||||||| || |||||||||||| |
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| T |
37698535 |
atgttgtggcgtcaccctgagaatgttgaacttgagaaagtcaaagttgttcattactgtgcagcggta |
37698603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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