View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5096-Insertion-5 (Length: 575)
Name: NF5096-Insertion-5
Description: NF5096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5096-Insertion-5 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 472; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 8 - 575
Target Start/End: Complemental strand, 54660288 - 54659731
Alignment:
| Q |
8 |
ctcccatccgacaatgatgaagnnnnnnnccagttgagcccccaagccctcacggggcagttctcccctcaaaccctcaggttcaaaggcctattagatg |
107 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
54660288 |
ctcccatccgacaatgatgaagtttttttccagttgagcccccaagccctcacggggcagttctcccctcaaaccctcaggttcaaagtcctattagatg |
54660189 |
T |
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| Q |
108 |
gactcgctgtgtccgttttgatggacaccggtagtgatcacaacatcctgcaaagccgcattgctactcacttacgcataccctcaaaacctgctccaaa |
207 |
Q |
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|||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54660188 |
gactcgctgtgtccgttttggtggacaccgatggtgatcacaacatcctgcaaagccgcattgctactcacttacgcataccctcaaaacctgctccaaa |
54660089 |
T |
|
| Q |
208 |
cttctcagtaatggttggaaatggttctcaccttcattgcacggacaaaaccatcttttccacattccattctaccttttcccaattgaaggagttgatg |
307 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
54660088 |
cttctcagtaatggtt----------ctcaccttcattgcacggacaaaaccatcttttccacattccattctaccttttcccaattgaaggagctgatg |
54659999 |
T |
|
| Q |
308 |
tcgtgctcagaatgaaatggttgcaaacattgggacccttacaagcagatttctccatccctaagatatcattccaccacaataacaatgaaataaccct |
407 |
Q |
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||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54659998 |
tcgtgcttggaatgaaatggttgcaaacattgggaccctaacaagcagatttctccatccctaagatatcattccaccacaataacaatgaaataaccct |
54659899 |
T |
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| Q |
408 |
tataggaaatcctagacattcaccctcccaatccacctttactcaattatgccacctcctgacatcacactcagtagcatccctccacatcttgacctat |
507 |
Q |
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| T |
54659898 |
tataggaaatcctagacattcaccctcccaatccacctttactcaattatgccacctcctgacatcacactcagtagcatccctccacatcttgacctat |
54659799 |
T |
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| Q |
508 |
caacagcgccccaatccccacaatcaaaaaccaattgaactacaaaacacaacaataaacaattccac |
575 |
Q |
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| T |
54659798 |
caacagcgccccaatcctcacaatcaaaaaccaactgaactacaaaacacaacaataaacaattccac |
54659731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 252 - 575
Target Start/End: Complemental strand, 16159328 - 16159005
Alignment:
| Q |
252 |
acaaaaccatcttttccacattccattctaccttttcccaattgaaggagttgatgtcgtgctcagaatgaaatggttgcaaacattgggacccttacaa |
351 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
16159328 |
acaaaatcatcttttccacattccattctacctttttccaattgaaggagctgatgtcgtgctcggaatgaaatggttgcaaacattgggacccttataa |
16159229 |
T |
|
| Q |
352 |
gcagatttctccatccctaagatatcattccaccacaataacaatgaaataacccttataggaaatcctagacattcaccctcccaatccacctttactc |
451 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16159228 |
gcagatttctccatccctaagatatccttccaccacaataacactgaaataacccttataggaaatcctagacattcaccctcccaatccacctttactc |
16159129 |
T |
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| Q |
452 |
aattatgccacctcctgacatcacactcagtagcatccctccacatcttgacctatcaacagcgccccaatccccacaatcaaaaaccaattgaactaca |
551 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
16159128 |
aattatgccacctcctgacatcacactcagtagcatccctccatatcttgacctatcaacagcaccccaatccccacaatcaaaaaccaactgaactaca |
16159029 |
T |
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| Q |
552 |
aaacacaacaataaacaattccac |
575 |
Q |
| |
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|||||||||||| ||||||||||| |
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| T |
16159028 |
aaacacaacaatcaacaattccac |
16159005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 16159600 - 16159357
Alignment:
| Q |
8 |
ctcccatccgacaatgatgaagnnnnnnnccagttgagcccccaagccctcacggggcagttctcccctcaaaccctcaggttcaaaggcctattagatg |
107 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
16159600 |
ctcccatccgacaatgatgaagtttttttccagttgagcccccaagccctcacggggcagttctcccctcaaaccctcaggttcaaaggcctactagatg |
16159501 |
T |
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| Q |
108 |
gactcgctgtgtccgttttgatggacaccggtagtgatcacaacatcctgcaaagccgcattgctactcacttacgcataccctcaaaacctgctccaaa |
207 |
Q |
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|||| || |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
16159500 |
gacttgccgtgtccgttttggtggacaccggtagtgatcacaacatcctgcaaaggcgcattgctactcacttacgcataccctcaaaacctgccccaaa |
16159401 |
T |
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| Q |
208 |
cttctcagtaatggttggaaatggttctcaccttcattgcacgg |
251 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
16159400 |
cttctccgtaatggttggaaatggttctcaccttcattgcacgg |
16159357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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