View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5096_low_2 (Length: 253)
Name: NF5096_low_2
Description: NF5096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5096_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 11 - 231
Target Start/End: Complemental strand, 54660504 - 54660284
Alignment:
| Q |
11 |
acatcatcaaccaaccccacaacatctcccacaccaaatcgcatacccatccgtcgtatcacaccaacacaaagagatgaacgtcgtgctcaaggcttat |
110 |
Q |
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| T |
54660504 |
acatcatcaaccaaccccacaacatctcccacaccaaattgcatacccatccgtcgtatcacaccaacacaaagagatgaacatcgtgctcaaggcttat |
54660405 |
T |
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| Q |
111 |
gttacaactgcaatgaaaaatttgctccaggtcataattgttccacgggacgcttccttctcctaatgcacgaagaaggtgacatcgaatctgtggagga |
210 |
Q |
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||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54660404 |
gttacaactgcgatgaaaaatttgctccaggtcataaatgttccacgggacgcttccttctcctaatgcacgaagaaggtgacatcgaatctgtggagga |
54660305 |
T |
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| Q |
211 |
accattcgagaccgagctccc |
231 |
Q |
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||||||||||||||||||||| |
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| T |
54660304 |
accattcgagaccgagctccc |
54660284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 11 - 231
Target Start/End: Complemental strand, 16159816 - 16159596
Alignment:
| Q |
11 |
acatcatcaaccaaccccacaacatctcccacaccaaatcgcatacccatccgtcgtatcacaccaacacaaagagatgaacgtcgtgctcaaggcttat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16159816 |
acatcatcaaccaaccccacaacatctcccacaccaaatcgcatacccatccgtcgtatcacaccaacacaaagagatgaacgtcgtgctcaaggcttat |
16159717 |
T |
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| Q |
111 |
gttacaactgcaatgaaaaatttgctccaggtcataattgttccacgggacgcttccttctcctaatgcacgaagaaggtgacatcgaatctgtggagga |
210 |
Q |
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||||||||||| |||||||||||| ||| || ||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
16159716 |
gttacaactgcgatgaaaaatttgttcccggccataaatgttccacgggacgctttcttctcctaatgcacgaagaaggtgacaccgaatctgtggagga |
16159617 |
T |
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| Q |
211 |
accattcgagaccgagctccc |
231 |
Q |
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|||||| |||||||||||||| |
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| T |
16159616 |
accatttgagaccgagctccc |
16159596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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