View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5097-Insertion-3 (Length: 359)
Name: NF5097-Insertion-3
Description: NF5097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5097-Insertion-3 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 8 - 359
Target Start/End: Original strand, 30840355 - 30840706
Alignment:
| Q |
8 |
tgtggtattgcaatagttggaacccctaagcttaatgcttccaatgtggagttccatccacaatgtgttacaaaacaccctattgcctcatgagctagaa |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30840355 |
tgtggtattgcaatagttggaacccctaagcttaatgcttccaatgtggagttccatccacaatgtgttacaaaacaccctattgcctcatgagctagaa |
30840454 |
T |
|
| Q |
108 |
cctttagctgagagcaccatgtcactactaagcttttctttgactccttttcaaaatcttttgggagcttagtctcttcagacgctctaacaacccataa |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
30840455 |
cctttagctgagagcaccatgtcactactaagcttttctttgactccttttcaaaatcttttgggagcttattctcttcagaagctctaacaacccataa |
30840554 |
T |
|
| Q |
208 |
gaagtaacttccactatctcttaaaccataagctaattcttgtatttgctcctcatcaagacttaccatacttccaaaagaaacataaacaactgatcct |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30840555 |
gaagtaacttccactatctcttaaaccataagctaattcttgtatttgctcctcatcaagacttaccatacttccaaaagaaacataaacaactgatcct |
30840654 |
T |
|
| Q |
308 |
tttggcttatcatttagccattccatgcatttttcattatacttgaattgtg |
359 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
30840655 |
tttggcttatcgtttagccattccatgcatttttcattatacttgaattgtg |
30840706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 8 - 359
Target Start/End: Original strand, 30844864 - 30845215
Alignment:
| Q |
8 |
tgtggtattgcaatagttggaacccctaagcttaatgcttccaatgtggagttccatccacaatgtgttacaaaacaccctattgcctcatgagctagaa |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30844864 |
tgtggtattgcaatagttggaacccctaagcttaatgcttccaatgtggagttccatccacaatgtgttacaaaacaccctattgcctcatgagctagaa |
30844963 |
T |
|
| Q |
108 |
cctttagctgagagcaccatgtcactactaagcttttctttgactccttttcaaaatcttttgggagcttagtctcttcagacgctctaacaacccataa |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
30844964 |
cctttagctgagagcaccatgtcactactaagcttttctttgactccttttcaaaatcttttgggagcttagtctcttcagaagctctaacaacccataa |
30845063 |
T |
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| Q |
208 |
gaagtaacttccactatctcttaaaccataagctaattcttgtatttgctcctcatcaagacttaccatacttccaaaagaaacataaacaactgatcct |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30845064 |
gaagtaacttccactatctcttaaaccataagctaattcttgtatttgctcctcatcaagacttaccatacttccaaaagaaacataaacaactgatcct |
30845163 |
T |
|
| Q |
308 |
tttggcttatcatttagccattccatgcatttttcattatacttgaattgtg |
359 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||| ||||||||||| |
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| T |
30845164 |
tttggcttatcatttaaccattccatgcatttttcattagtcttgaattgtg |
30845215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 44 - 330
Target Start/End: Original strand, 30817187 - 30817473
Alignment:
| Q |
44 |
gcttccaatgtggagttccatccacaatgtgttacaaaacaccctattgcctcatgagctagaacctttagctgagagcaccatgtcactactaagcttt |
143 |
Q |
| |
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|||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||| || ||| | |||||||| ||| ||||||| | |
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| T |
30817187 |
gcttccaatgtggaattccaaccacaatgtgttacaaaacaccctattgcttcatgagctagaacctctaactgggggcaccatgccacaactaagccat |
30817286 |
T |
|
| Q |
144 |
tctttgactccttttcaaaatcttttgggagcttagtctcttcagacgctctaacaacccataagaagtaacttccactatctcttaaaccataagctaa |
243 |
Q |
| |
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||| ||| | ||||||||| |||||||||||||||||||||||||| | | | || |||||||||||||||||||||| |||| | |||| || |||| |
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| T |
30817287 |
tctctgatttcttttcaaagtcttttgggagcttagtctcttcagatgttttcactacccataagaagtaacttccacaatctttcaaacaatgtgctac |
30817386 |
T |
|
| Q |
244 |
ttcttgtatttgctcctcatcaagacttaccatacttccaaaagaaacataaacaactgatccttttggcttatcatttagccattc |
330 |
Q |
| |
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||| | |||||| ||||||| || | ||||||| ||||| |||||||||||| | || | ||||||||||| |||||||||||| |
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| T |
30817387 |
ttcctctatttgttcctcattgagtgatgccatactcccaaatgaaacataaacagcagacctttttggcttattatttagccattc |
30817473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 8 - 338
Target Start/End: Original strand, 30853340 - 30853670
Alignment:
| Q |
8 |
tgtggtattgcaatagttggaacccctaagcttaatgcttccaatgtggagttccatccacaatgtgttacaaaacaccctattgcctcatgagctagaa |
107 |
Q |
| |
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||||| ||||||| | ||||||| |||||||| | |||||||||||||| ||||| |||||||||||||||||||||||||| | ||||| ||||||| |
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| T |
30853340 |
tgtggcattgcaacaattggaactcctaagctaatagcttccaatgtggaattccaaccacaatgtgttacaaaacaccctatagattcatgtgctagaa |
30853439 |
T |
|
| Q |
108 |
cctttagctgagagcaccatgtcactactaagcttttctttgactccttttcaaaatcttttgggagcttagtctcttcagacgctctaacaacccataa |
207 |
Q |
| |
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| |||| || ||||||||||| || || || | ||| | || || ||||||||||||||| |||| || | |||||| || | | ||||||||||||| |
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| T |
30853440 |
cttttaattgggagcaccatgttacaacaaaccctttttgtgtctttttttcaaaatcttttcggagtttcggctcttcggatggtttaacaacccataa |
30853539 |
T |
|
| Q |
208 |
gaagtaacttccactatctcttaaaccataagctaattcttgtatttgctcctcatcaagacttaccatacttccaaaagaaacataaacaactgatcct |
307 |
Q |
| |
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|||||||||| ||| |||| ||||| || |||||| ||| | || ||| || |||| || | ||| ||| ||||||||| ||||||||||||||||| |
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| T |
30853540 |
gaagtaactttcacaatctgttaaagcacaagctacttcctctaattgttcttcattgagtgatgccaaactaccaaaagaagcataaacaactgatcct |
30853639 |
T |
|
| Q |
308 |
tttggcttatcatttagccattccatgcatt |
338 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |
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| T |
30853640 |
tttggcttatcatttagccattccatacatt |
30853670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 9 - 327
Target Start/End: Original strand, 30858613 - 30858934
Alignment:
| Q |
9 |
gtggtattgcaatagttggaacccctaagcttaatgcttccaatgtggagttccatccacaatgtgttacaaaacaccctattgcctcatgagctagaac |
108 |
Q |
| |
|
|||| ||||||| | ||||||| |||| || || |||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
30858613 |
gtggcattgcaacaattggaactcctatactcaaagcttccaatgtggaattccaaccacaatgtgttacaaaacaccctattgcttcatgagctagaac |
30858712 |
T |
|
| Q |
109 |
ctttagct-gagagcaccatgtcactactaagcttttctttga--ctccttttcaaaatcttttgggagcttagtctcttcagacgctctaacaacccat |
205 |
Q |
| |
|
|| || || | | |||||||||||| ||||||| |||| ||| | |||||||| |||||||| ||||||||||||||||| | ||| || | |||| |
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| T |
30858713 |
ctctaactggggggcaccatgtcacaactaagccattctctgattttttttttcaaagtcttttggaagcttagtctcttcagaggttctcactatccat |
30858812 |
T |
|
| Q |
206 |
aagaagtaacttccactatctcttaaaccataagctaattcttgtatttgctcctcatcaagacttaccatacttccaaaagaaacataaacaactgatc |
305 |
Q |
| |
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|| ||||||||||||| |||| | |||| ||| |||| ||| | |||||| ||||| | | ||| ||||||| ||||| |||||||||||||| || | |
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| T |
30858813 |
aaaaagtaacttccacaatctttcaaacaatacgctacttcctttatttgttcctctttgactcttgccatactcccaaatgaaacataaacaacagacc |
30858912 |
T |
|
| Q |
306 |
cttttggcttatcatttagcca |
327 |
Q |
| |
|
||||||||||| ||||||||| |
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|
| T |
30858913 |
tttttggcttattatttagcca |
30858934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 192 - 329
Target Start/End: Original strand, 13670374 - 13670511
Alignment:
| Q |
192 |
ctctaacaacccataagaagtaacttccactatctcttaaaccataagctaattcttgtatttgctcctcatcaagacttaccatacttccaaaagaaac |
291 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||| |||| || |||||| ||||||| ||||||| ||| ||||| |||| || ||||| || || |
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| T |
13670374 |
ctctaacaacccataagaaataactttcactatcttttaatcctaaagctagttcttgtgtttgctcttcactaagaccagccatgctaccaaatgagac |
13670473 |
T |
|
| Q |
292 |
ataaacaactgatccttttggcttatcatttagccatt |
329 |
Q |
| |
|
||| |||||||| ||||||||||| ||||||||||||| |
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| T |
13670474 |
atacacaactgaaccttttggcttctcatttagccatt |
13670511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 192 - 329
Target Start/End: Complemental strand, 13688239 - 13688102
Alignment:
| Q |
192 |
ctctaacaacccataagaagtaacttccactatctcttaaaccataagctaattcttgtatttgctcctcatcaagacttaccatacttccaaaagaaac |
291 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||| |||| || |||||| ||||||| ||||||| ||| ||||| |||| || ||||| ||| | |
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| T |
13688239 |
ctctaacaacccataagaaataactttcactatcttttaatcctaaagctagttcttgtgtttgctcttcactaagaccggccatgctaccaaatgaagc |
13688140 |
T |
|
| Q |
292 |
ataaacaactgatccttttggcttatcatttagccatt |
329 |
Q |
| |
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||| |||||||| ||||| ||||||||||| ||||||| |
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| T |
13688139 |
atacacaactgaacctttaggcttatcattcagccatt |
13688102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 13724943 - 13724983
Alignment:
| Q |
44 |
gcttccaatgtggagttccatccacaatgtgttacaaaaca |
84 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||| |
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|
| T |
13724943 |
gcttccaatgtcgagttccaaccacaatgtgttacaaaaca |
13724983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 13695595 - 13695653
Alignment:
| Q |
26 |
ggaacccctaagcttaatgcttccaatgtggagttccatccacaatgtgttacaaaaca |
84 |
Q |
| |
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||||| ||||| || || ||||||||||| || ||||| |||||||||||||||||||| |
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| T |
13695595 |
ggaactcctaaactcaaagcttccaatgttgaattccaaccacaatgtgttacaaaaca |
13695653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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