View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5097-Insertion-4 (Length: 210)
Name: NF5097-Insertion-4
Description: NF5097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5097-Insertion-4 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 8e-91; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 9 - 200
Target Start/End: Original strand, 41975810 - 41976002
Alignment:
| Q |
9 |
gacgctctcactacaaagatcaagacaatgcaacagactgaacttacaaatgccaaaacattaactcatacacatcaaaagcttgcaatcaaatatacac |
108 |
Q |
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| T |
41975810 |
gacgttctcactacaaagatcaagacaatgcaacagactgaacttacaaaggccaaaacattaactcatacacatcaaaagcttgcaatcaaatatacac |
41975909 |
T |
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| Q |
109 |
aattttc-tttatcatgctttacttgggtataaatgaatcaaaaagctttgacaatacattctacaatagaactcgctcactattgtgattac |
200 |
Q |
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| T |
41975910 |
aattttcttttatcatgctttacttgggtataaatgaatcgaaaagctttgacaatacattctacaatagaaatcgctcactattgtgattac |
41976002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 158 - 209
Target Start/End: Original strand, 41976034 - 41976085
Alignment:
| Q |
158 |
gacaatacattctacaatagaactcgctcactattgtgattacctgaaaaac |
209 |
Q |
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| T |
41976034 |
gacaatacattgtacaatagaactcgctcactattgtgattacctgaaaaac |
41976085 |
T |
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