View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5097-Insertion-5 (Length: 167)
Name: NF5097-Insertion-5
Description: NF5097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5097-Insertion-5 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 1e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 1e-82
Query Start/End: Original strand, 13 - 167
Target Start/End: Complemental strand, 47546782 - 47546628
Alignment:
| Q |
13 |
tttgtatattgaatatgggtttaatttcattgaactgtagcggctctgttaggatcatgcaagtcaacggtggtaccagtggggtccacacagaattcaa |
112 |
Q |
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| T |
47546782 |
tttgtatattgaatatgggtttaatttcattgaactgtagcggctctgttaggatcatgcaagtcaacggtggtaccagtggggtccacacagaattcaa |
47546683 |
T |
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| Q |
113 |
caaatccacaacaagtacatcatcaaattactgtcacaacagctagtaacatgtg |
167 |
Q |
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| T |
47546682 |
caaatccacaacaagtacatcatcaaattactgtcacaacagctagtaacatgtg |
47546628 |
T |
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Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 45 - 122
Target Start/End: Complemental strand, 47540417 - 47540340
Alignment:
| Q |
45 |
aactgtagcggctctgttaggatcatgcaagtcaacggtggtaccagtggggtccacacagaattcaacaaatccaca |
122 |
Q |
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| T |
47540417 |
aactgtagatgctctgttaggatcttgcaattcaacggtggtagcggtagggtccacacagaattcaacaaacccaca |
47540340 |
T |
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