View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5097_high_2 (Length: 564)
Name: NF5097_high_2
Description: NF5097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5097_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 484; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 14 - 546
Target Start/End: Original strand, 46023900 - 46024440
Alignment:
| Q |
14 |
agacaccttaaaatttccacaccaaactcacaaaaacaacaatatttcattgatccct--------agacaaaccctatgagaacaaagaaaggaacact |
105 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
46023900 |
agacaccttaaaatttccacaccaaactcacaaaaacaacaatatttctttgatccctcatgaaatagacaaaccctatgagaacaaagaaagaaacact |
46023999 |
T |
|
| Q |
106 |
attaagaagattccaaaaacatcaaacaaaggtcatcagaaaaagtatctaggagtgagacaaaggccatcaggaagatggatagctgagatcaaagact |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
46024000 |
attaagaagattccaaaaacatcaaacaaaggtcatcagaaaaagtatctaggagtgaggcaaaggccatcaggaagatggatagctgagatcaaagact |
46024099 |
T |
|
| Q |
206 |
catcacagaaactaagactatggttaggtacttttgatagagcagaagatgctgctttgtcatatgattctgctgcaaggcttcttagaggaagaaatgc |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46024100 |
catcacagaaactaagactatggttaggtacttttgatagagcagaagatgctgctctgtcatatgattctgctgcaaggcttcttagaggaagaaatgc |
46024199 |
T |
|
| Q |
306 |
caaaactaactttccaaatactcatgaacaagatttcagcattttagggaagaatcctagagcttttcagcttcttaagcatgcaatgatgaagaaccat |
405 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46024200 |
caaaactaactttccaaatactcatgaacaagatttcagcattttagggaagaatcctagagcttttcagcttcttaagcatgcaatgatgaagaaccat |
46024299 |
T |
|
| Q |
406 |
gcagtttctgcatcatcatctgtttattccactgtcatgatgccatggaaaaatgaccaacttgacgcgattgttgaggaaactatagtctgttctattc |
505 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
46024300 |
gcagtttcttcatcatcatctgtttattccactgtcatgatgccatggaaaaatgaccaacttgacgcgattgttgaagaaactatagtttgttctattc |
46024399 |
T |
|
| Q |
506 |
ctgatgatgaaggttctacagctgcagggtgtagtggaatt |
546 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46024400 |
ctgatgatgaaggttctacagctgcagggtgtagtggaatt |
46024440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 14 - 546
Target Start/End: Complemental strand, 46265467 - 46264927
Alignment:
| Q |
14 |
agacaccttaaaatttccacaccaaactcacaaaaacaacaatatttcattgatccct--------agacaaaccctatgagaacaaagaaaggaacact |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
46265467 |
agacaccttaaaatttccacaccaaactcacaaaaacaacaatatttctttgatccctcatgaaatagacaaaccctatgagaacaaagaaagaaacact |
46265368 |
T |
|
| Q |
106 |
attaagaagattccaaaaacatcaaacaaaggtcatcagaaaaagtatctaggagtgagacaaaggccatcaggaagatggatagctgagatcaaagact |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
46265367 |
attaagaagattccaaaaacatcaaacaaaggtcatcagaaaaagtatctaggagtgaggcaaaggccatcaggaagatggatagctgagatcaaagact |
46265268 |
T |
|
| Q |
206 |
catcacagaaactaagactatggttaggtacttttgatagagcagaagatgctgctttgtcatatgattctgctgcaaggcttcttagaggaagaaatgc |
305 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46265267 |
catcacagaaactaagactatggttaggtacttttgatagagcagaagatgctgctctgtcatatgattctgctgcaaggcttcttagaggaagaaatgc |
46265168 |
T |
|
| Q |
306 |
caaaactaactttccaaatactcatgaacaagatttcagcattttagggaagaatcctagagcttttcagcttcttaagcatgcaatgatgaagaaccat |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46265167 |
caaaactaactttccaaatactcatgaacaagatttcagcattttagggaagaatcctagagcttttcagcttcttaagcatgcaatgatgaagaaccat |
46265068 |
T |
|
| Q |
406 |
gcagtttctgcatcatcatctgtttattccactgtcatgatgccatggaaaaatgaccaacttgacgcgattgttgaggaaactatagtctgttctattc |
505 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
46265067 |
gcagtttcttaatcatcatctgtttattccactgtcatgatgccatggtaaaatgaccaacttgacgcgattgttgaagaaactatagtttgttctattc |
46264968 |
T |
|
| Q |
506 |
ctgatgatgaaggttctacagctgcagggtgtagtggaatt |
546 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46264967 |
ctgatgatgaaggttctacagctgcagggtgtagtggaatt |
46264927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 12508729 - 12508680
Alignment:
| Q |
160 |
gtgagacaaaggccatcaggaagatggatagctgagatcaaagactcatc |
209 |
Q |
| |
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|||||||||||||||||||| |||||| |||||||||||||||||||||| |
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|
| T |
12508729 |
gtgagacaaaggccatcaggtagatgggtagctgagatcaaagactcatc |
12508680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 160 - 260
Target Start/End: Original strand, 3160225 - 3160325
Alignment:
| Q |
160 |
gtgagacaaaggccatcaggaagatggatagctgagatcaaagactcatcacagaaactaagactatggttaggtacttttgatagagcagaagatgctg |
259 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||| ||||| | ||||| ||||| | |||||||| |||||||||| ||| ||||| |||| |
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| T |
3160225 |
gtgagacaaaggccatcaggaagatgggtagctgagataaaagataccattcagaagataagagtttggttaggaacttttgatacagctgaagaagctg |
3160324 |
T |
|
| Q |
260 |
c |
260 |
Q |
| |
|
| |
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|
| T |
3160325 |
c |
3160325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 33274382 - 33274344
Alignment:
| Q |
166 |
caaaggccatcaggaagatggatagctgagatcaaagac |
204 |
Q |
| |
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|||||||||||||| |||||| ||||||||||||||||| |
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| T |
33274382 |
caaaggccatcagggagatgggtagctgagatcaaagac |
33274344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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