View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5097_high_3 (Length: 479)
Name: NF5097_high_3
Description: NF5097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5097_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 3e-89; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 262 - 464
Target Start/End: Complemental strand, 11148289 - 11148088
Alignment:
| Q |
262 |
caccaaaaatctactttaattgatgagtacaattttaaaacgatacnnnnnnnnncgagggaatatcatagtaaactttaacatgattttgtttgtcatt |
361 |
Q |
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| T |
11148289 |
caccaaaaatcaactttaattgatgagtacaattttaaaacgatactaaaaaaa-cgagggaatatcatagtaaactttaacatgattttgtttgtcatt |
11148191 |
T |
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| Q |
362 |
ttcattatccacaaaatacattttgatttacaataccttagatatttgttttataccgttctgtctattacatgttttctttaacaaatcaattagaccc |
461 |
Q |
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| T |
11148190 |
ttcattatccacaaaatacattttgatttacaataccttagatatttgttttataccgttctgtctattacatgttttctttaacaaatcaattagaccc |
11148091 |
T |
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| Q |
462 |
tca |
464 |
Q |
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||| |
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| T |
11148090 |
tca |
11148088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 48 - 187
Target Start/End: Complemental strand, 11148510 - 11148372
Alignment:
| Q |
48 |
ttatttcatgtgatgcttgtttctacttcttaaagtgtcaacgnnnnnnnntgttgaaaattagnnnnnnnatatcttttagttggctcattttgtaatt |
147 |
Q |
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| T |
11148510 |
ttatttcatgtgatgtttgtttctacttcttaaaatgtcaaccaaaaaaaatgttgaaaattagtttttt-atatcttttagttggctcattttgtaatt |
11148412 |
T |
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| Q |
148 |
gtcataatttaaaggtatataacacattacatttattaga |
187 |
Q |
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| T |
11148411 |
gtcataatttaaaggtttataacacattatatttattaga |
11148372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 11148727 - 11148691
Alignment:
| Q |
19 |
ttgggtttgaaacttgtcggaaagacaaattatttca |
55 |
Q |
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| T |
11148727 |
ttgggtttgaaacttgtcgaaaagacaaattatttca |
11148691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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