View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5097_low_11 (Length: 263)
Name: NF5097_low_11
Description: NF5097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5097_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 48769880 - 48770109
Alignment:
| Q |
18 |
tataaaactcacaacttatgtataaaatttaaacaaacgacacatccctcaacctataacacatattggttaaccgttaacgtattcaatttttcagaca |
117 |
Q |
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| T |
48769880 |
tataaaactcacaacttatgtataaaatttaaacaaacgacacatccctcaacctataacacatattggttaaccgttaacgtattcaatttttcagaca |
48769979 |
T |
|
| Q |
118 |
aacaacctataatctaaggagaaaattgatgcataaagtttagtaattgatattaattatatattcaagagaaagttgttttgggaacaagtttaagcaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
48769980 |
aacaacctataatctaaggagaaaattgatgcataaagtttagtaattgatattaattatatattcaggagaaagttgttttgggaacaaatttaagcaa |
48770079 |
T |
|
| Q |
218 |
ttctagtttgataaaaagtcattttcaaat |
247 |
Q |
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|||| ||||||||||||||||||||||||| |
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| T |
48770080 |
ttctggtttgataaaaagtcattttcaaat |
48770109 |
T |
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