View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5097_low_13 (Length: 252)
Name: NF5097_low_13
Description: NF5097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5097_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 45 - 177
Target Start/End: Original strand, 45151177 - 45151309
Alignment:
| Q |
45 |
tatcacattggtatttatactactaggctatataactgattttgttaaacatctaacatggcttaactagctcttaagtgttaatagataactaagaact |
144 |
Q |
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| T |
45151177 |
tatcacataggtgtgtatactactaggctatataactgattttgttaaacatctaacagggcttaactagctcttaagtgttaacagataactgagaact |
45151276 |
T |
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| Q |
145 |
aattcctattccttgtacataattttgactgat |
177 |
Q |
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| T |
45151277 |
aattcctattccttgtacataattttgactgat |
45151309 |
T |
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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 49
Target Start/End: Original strand, 45151117 - 45151146
Alignment:
| Q |
20 |
aggaagtgaagataaattgaaaatgtatca |
49 |
Q |
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| T |
45151117 |
aggaagtgaagataaattgaaaatgtatca |
45151146 |
T |
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