View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5097_low_14 (Length: 251)
Name: NF5097_low_14
Description: NF5097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5097_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 10 - 102
Target Start/End: Complemental strand, 4071905 - 4071813
Alignment:
| Q |
10 |
aaatgaaagagttggaaacttgtatgcgtctacacggtagtagtattttaacacgatccaaattattgatttttaacacgaggcttactgtta |
102 |
Q |
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| T |
4071905 |
aaatgaaagagttggaaacttgtatgcgtctacacggtagtagtattttaacacgatccaaattattgatttttaacacgaggcttactgtta |
4071813 |
T |
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Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 162 - 251
Target Start/End: Complemental strand, 4071753 - 4071667
Alignment:
| Q |
162 |
actaacgagagtatataaatactattagggttggagagatagggtaactgttacacgataattaagaagtactatatcctattataacta |
251 |
Q |
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| T |
4071753 |
actaacgagagtatataaatactattagggttggagagataaggtaactgttacacgataattaagaag---tatatcctattataacta |
4071667 |
T |
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