View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5097_low_16 (Length: 228)
Name: NF5097_low_16
Description: NF5097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5097_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 34146138 - 34146352
Alignment:
| Q |
1 |
tagttttgtcaaaaagcttcacagcttcgtcaagttcaccgttcttggaatacacagtaatcatagtatttaaggaggttaaatgtttgagactcatttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34146138 |
tagttttgtcaaaaagcttcacagcttcgtcaagttcaccgttcttggaatacacagtaatcatagtatttaaggaggttaaatgtttgagactcatttt |
34146237 |
T |
|
| Q |
101 |
ctcaaacaannnnnnnnnnnnnnnaaactgaccactcatcgcataacctttaatcatcaaattattagagatgagagttttatctctcaatccataaaag |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34146238 |
ctcaaacaattttttcgattttttaaactgaccactcatcgcataacctttaatcatcaaattattagagatgagagttttatctctcaatccataaaag |
34146337 |
T |
|
| Q |
201 |
atcatccccgcttct |
215 |
Q |
| |
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||||||||||||||| |
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| T |
34146338 |
atcatccccgcttct |
34146352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 29009258 - 29009044
Alignment:
| Q |
1 |
tagttttgtcaaaaagcttcacagcttcgtcaagttcaccgttcttggaatacacagtaatcatagtatttaaggaggttaaatgtttgagactcatttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29009258 |
tagttttgtcaaaaagcttcacagcttcatcaagttcaccgttcttggaatacacagtaatcatagtatttaaggaggttaaatgtttgagactcatttt |
29009159 |
T |
|
| Q |
101 |
ctcaaacaannnnnnnnnnnnnnnaaactgaccactcatcgcataacctttaatcatcaaattattagagatgagagttttatctctcaatccataaaag |
200 |
Q |
| |
|
|||||| || || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29009158 |
ctcaaataattttttcgattttctaatccgaccactcatcgcataacctttaatcatcaaattattagagatgagagttttatctctcaatccataaaag |
29009059 |
T |
|
| Q |
201 |
atcatccccgcttct |
215 |
Q |
| |
|
|||||| | |||||| |
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|
| T |
29009058 |
atcatctcagcttct |
29009044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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