View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5097_low_4 (Length: 426)

Name: NF5097_low_4
Description: NF5097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5097_low_4
NF5097_low_4
[»] chr8 (19 HSPs)
chr8 (1-410)||(45152726-45153150)
chr8 (72-120)||(43848021-43848069)
chr8 (71-111)||(45140829-45140869)
chr8 (69-108)||(39319430-39319469)
chr8 (50-104)||(9211768-9211822)
chr8 (55-108)||(7379868-7379921)
chr8 (71-108)||(31497448-31497485)
chr8 (71-111)||(11740473-11740513)
chr8 (75-111)||(32541975-32542011)
chr8 (44-104)||(44264316-44264376)
chr8 (75-117)||(44826701-44826743)
chr8 (75-108)||(1893229-1893262)
chr8 (75-108)||(8435812-8435845)
chr8 (75-108)||(17116299-17116332)
chr8 (75-108)||(25024139-25024172)
chr8 (75-108)||(31582507-31582540)
chr8 (75-108)||(31687411-31687444)
chr8 (75-108)||(41693372-41693405)
chr8 (75-111)||(8271650-8271686)
[»] chr6 (14 HSPs)
chr6 (1-80)||(3107269-3107348)
chr6 (75-111)||(6709044-6709080)
chr6 (71-106)||(30810545-30810580)
chr6 (75-109)||(34232221-34232255)
chr6 (75-108)||(559094-559127)
chr6 (75-108)||(1805721-1805754)
chr6 (75-108)||(2443207-2443240)
chr6 (71-108)||(10856871-10856908)
chr6 (75-108)||(12432025-12432058)
chr6 (75-108)||(27719942-27719975)
chr6 (75-108)||(28721115-28721148)
chr6 (75-108)||(32732566-32732599)
chr6 (75-108)||(34684372-34684405)
chr6 (75-107)||(31451303-31451335)
[»] chr1 (32 HSPs)
chr1 (55-110)||(18346743-18346798)
chr1 (9-105)||(2022660-2022755)
chr1 (71-111)||(2498642-2498682)
chr1 (53-110)||(38596821-38596878)
chr1 (72-108)||(28867855-28867891)
chr1 (72-108)||(31149790-31149826)
chr1 (55-111)||(52702367-52702423)
chr1 (75-110)||(15314031-15314066)
chr1 (75-109)||(7710310-7710344)
chr1 (75-109)||(38966828-38966862)
chr1 (75-108)||(323626-323659)
chr1 (75-108)||(1918834-1918867)
chr1 (75-108)||(13120941-13120974)
chr1 (75-108)||(19898242-19898275)
chr1 (71-108)||(23710776-23710813)
chr1 (75-108)||(26205085-26205118)
chr1 (75-108)||(29379788-29379821)
chr1 (75-108)||(29586944-29586977)
chr1 (75-108)||(29683486-29683519)
chr1 (75-108)||(29703527-29703560)
chr1 (75-108)||(30780077-30780110)
chr1 (75-108)||(32367710-32367743)
chr1 (75-108)||(33561201-33561234)
chr1 (75-108)||(36300425-36300458)
chr1 (75-108)||(36838023-36838056)
chr1 (75-108)||(39827350-39827383)
chr1 (75-108)||(41150568-41150601)
chr1 (75-108)||(42063612-42063645)
chr1 (75-108)||(44910608-44910641)
chr1 (71-108)||(46370465-46370502)
chr1 (71-108)||(49219789-49219826)
chr1 (1-85)||(3391756-3391840)
[»] scaffold0016 (2 HSPs)
scaffold0016 (55-105)||(85059-85109)
scaffold0016 (75-108)||(92843-92876)
[»] chr7 (22 HSPs)
chr7 (69-111)||(27089029-27089071)
chr7 (69-111)||(27189230-27189272)
chr7 (75-113)||(43254945-43254983)
chr7 (71-108)||(9488161-9488198)
chr7 (71-108)||(19831450-19831487)
chr7 (71-108)||(36436884-36436921)
chr7 (75-111)||(21254000-21254036)
chr7 (17-91)||(19756684-19756758)
chr7 (75-117)||(48831412-48831454)
chr7 (75-108)||(790609-790642)
chr7 (71-108)||(21375373-21375410)
chr7 (75-108)||(21745138-21745171)
chr7 (1-90)||(24171502-24171591)
chr7 (75-108)||(31512036-31512069)
chr7 (71-108)||(33027609-33027646)
chr7 (75-108)||(33203005-33203038)
chr7 (75-108)||(36245744-36245777)
chr7 (75-108)||(42375156-42375189)
chr7 (75-108)||(42586749-42586782)
chr7 (75-108)||(45686224-45686257)
chr7 (75-107)||(21739318-21739350)
chr7 (75-111)||(40636518-40636554)
[»] chr5 (36 HSPs)
chr5 (55-105)||(23921758-23921808)
chr5 (1-80)||(5522086-5522165)
chr5 (71-110)||(7652307-7652346)
chr5 (75-108)||(9160030-9160063)
chr5 (55-108)||(11099920-11099973)
chr5 (1-78)||(31408771-31408848)
chr5 (71-111)||(11663262-11663302)
chr5 (75-111)||(12714065-12714101)
chr5 (75-111)||(12775293-12775329)
chr5 (75-111)||(13156236-13156272)
chr5 (76-111)||(27868188-27868223)
chr5 (75-110)||(43403246-43403281)
chr5 (75-109)||(5381185-5381219)
chr5 (75-109)||(6603263-6603297)
chr5 (1-91)||(7897144-7897233)
chr5 (75-109)||(19955659-19955693)
chr5 (75-109)||(24801575-24801609)
chr5 (71-105)||(32381016-32381050)
chr5 (71-108)||(1710555-1710592)
chr5 (75-108)||(2672185-2672218)
chr5 (75-108)||(5997248-5997281)
chr5 (75-108)||(8023286-8023319)
chr5 (75-108)||(8285589-8285622)
chr5 (75-108)||(11061820-11061853)
chr5 (75-108)||(13227903-13227936)
chr5 (75-108)||(14646717-14646750)
chr5 (75-108)||(15531215-15531248)
chr5 (75-108)||(16856321-16856354)
chr5 (75-108)||(19526508-19526541)
chr5 (75-108)||(32383614-32383647)
chr5 (75-108)||(35235081-35235114)
chr5 (75-108)||(35235895-35235928)
chr5 (75-108)||(36686602-36686635)
chr5 (75-108)||(39276182-39276215)
chr5 (75-111)||(15444212-15444248)
chr5 (55-111)||(16475432-16475488)
[»] chr4 (33 HSPs)
chr4 (1-108)||(3919105-3919211)
chr4 (53-108)||(40120645-40120700)
chr4 (71-108)||(3010448-3010485)
chr4 (69-106)||(16398447-16398484)
chr4 (71-108)||(23867249-23867286)
chr4 (75-108)||(37114637-37114670)
chr4 (71-108)||(47416882-47416919)
chr4 (75-111)||(4938693-4938729)
chr4 (75-111)||(18583603-18583639)
chr4 (75-111)||(25439852-25439888)
chr4 (75-111)||(33004418-33004454)
chr4 (75-110)||(11601450-11601485)
chr4 (75-110)||(45906912-45906947)
chr4 (69-100)||(56544950-56544981)
chr4 (55-109)||(24953523-24953577)
chr4 (75-109)||(27397099-27397133)
chr4 (75-109)||(29414276-29414310)
chr4 (71-105)||(35821629-35821663)
chr4 (75-108)||(4392068-4392101)
chr4 (75-108)||(7707151-7707184)
chr4 (75-108)||(8942653-8942686)
chr4 (75-108)||(11151266-11151299)
chr4 (75-108)||(21370579-21370612)
chr4 (75-108)||(22037695-22037728)
chr4 (75-108)||(27184970-27185003)
chr4 (75-108)||(31679629-31679662)
chr4 (75-108)||(42117618-42117651)
chr4 (75-108)||(43225063-43225096)
chr4 (75-108)||(53407933-53407966)
chr4 (75-108)||(56373222-56373255)
chr4 (75-111)||(33116843-33116879)
chr4 (71-103)||(36007377-36007409)
chr4 (75-111)||(37971079-37971115)
[»] chr2 (28 HSPs)
chr2 (69-108)||(2265487-2265526)
chr2 (69-108)||(9263667-9263706)
chr2 (69-108)||(16487642-16487681)
chr2 (71-108)||(3378132-3378169)
chr2 (71-108)||(8340549-8340586)
chr2 (71-108)||(17263120-17263157)
chr2 (75-108)||(41796071-41796104)
chr2 (71-108)||(44276532-44276569)
chr2 (75-111)||(7399615-7399651)
chr2 (69-109)||(39675994-39676034)
chr2 (69-108)||(40868693-40868732)
chr2 (75-109)||(13527266-13527300)
chr2 (75-109)||(36711837-36711871)
chr2 (75-108)||(2545752-2545785)
chr2 (75-108)||(4452855-4452888)
chr2 (75-108)||(5040546-5040579)
chr2 (75-108)||(8687727-8687760)
chr2 (75-108)||(8705837-8705870)
chr2 (75-108)||(9887745-9887778)
chr2 (75-108)||(15569956-15569989)
chr2 (71-108)||(18212851-18212888)
chr2 (75-108)||(21866022-21866055)
chr2 (75-108)||(24401448-24401481)
chr2 (75-108)||(28381979-28382012)
chr2 (71-111)||(38578371-38578412)
chr2 (75-108)||(41323564-41323597)
chr2 (75-108)||(43136413-43136446)
chr2 (75-107)||(18710930-18710962)
[»] scaffold1526 (1 HSPs)
scaffold1526 (71-108)||(1364-1401)
[»] chr3 (30 HSPs)
chr3 (71-108)||(37713316-37713353)
chr3 (53-106)||(42218382-42218435)
chr3 (71-111)||(16126520-16126560)
chr3 (71-111)||(44748201-44748241)
chr3 (75-107)||(50316504-50316536)
chr3 (71-110)||(30549292-30549331)
chr3 (69-108)||(54541388-54541427)
chr3 (71-109)||(52795669-52795707)
chr3 (75-108)||(2579341-2579374)
chr3 (75-108)||(2852678-2852711)
chr3 (75-108)||(29080619-29080652)
chr3 (75-108)||(29717566-29717599)
chr3 (75-108)||(33392466-33392499)
chr3 (75-108)||(37089042-37089075)
chr3 (75-108)||(37528085-37528118)
chr3 (75-108)||(38186544-38186577)
chr3 (75-108)||(38891367-38891400)
chr3 (71-108)||(39470619-39470656)
chr3 (75-108)||(40479406-40479439)
chr3 (75-108)||(40562677-40562710)
chr3 (75-108)||(45344381-45344414)
chr3 (71-108)||(49852616-49852653)
chr3 (71-108)||(50500554-50500591)
chr3 (75-108)||(52858677-52858710)
chr3 (75-108)||(54671570-54671603)
chr3 (75-108)||(55227126-55227159)
chr3 (75-111)||(892756-892792)
chr3 (72-108)||(8873608-8873644)
chr3 (75-111)||(35500414-35500450)
chr3 (75-107)||(45369679-45369711)
[»] scaffold0031 (1 HSPs)
scaffold0031 (75-111)||(129500-129536)
[»] scaffold0027 (1 HSPs)
scaffold0027 (75-111)||(41060-41096)
[»] scaffold0197 (1 HSPs)
scaffold0197 (75-114)||(28358-28397)
[»] scaffold0122 (1 HSPs)
scaffold0122 (75-109)||(11782-11816)
[»] scaffold0362 (1 HSPs)
scaffold0362 (75-108)||(6182-6215)
[»] scaffold0349 (1 HSPs)
scaffold0349 (75-108)||(9364-9397)
[»] scaffold0246 (1 HSPs)
scaffold0246 (75-108)||(7810-7843)
[»] scaffold0116 (1 HSPs)
scaffold0116 (75-108)||(25677-25710)
[»] scaffold0002 (1 HSPs)
scaffold0002 (75-108)||(432033-432066)
[»] scaffold0003 (1 HSPs)
scaffold0003 (55-103)||(417917-417965)


Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 45152726 - 45153150
Alignment:
Q  1 tagttgatccgctaagtttaccaaaaacgtcatttagcttatcaactatctatcatcagtcattagcgataagctatcagctatctgctatttttaccaa 100  Q
    ||||||| ||| ||| ||||||||| || |||||||||||||||  ||||||||||||||||| | | |||| ||||||||||| |||||||||||| ||    
T  45152726 tagttgaaccgttaattttaccaaacacttcatttagcttatcagttatctatcatcagtcatcaactataaactatcagctatatgctatttttacgaa 45152825  T
Q  101 acagagccatacttttttatgctttatgttaacagatcctatctagtttgtttgagacagaaataaataacagaggggtctttggtttaaaaggggaatg 200  Q
    |||||| |||| ||||||||||||| |||||| ||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  45152826 acagagacatatttttttatgctttctgttaatagaccctatctagttagtttgagacagaaataaataacagaggggtgtttggtttaaaaggggaatg 45152925  T
Q  201 c---------------atttagattttctcatcttcgtcttgtatctttctaatactgagttagtgattggggtttcttaaatgaaataacttttatttc 285  Q
                    |||||||||| ||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||| ||||||||||    
T  45152926 ttgtgggtctgtatgtatttagatttcctcatcttcgtcttgtatctttctaatactgagctagcgactggggtttcttaaatgaaatatcttttatttc 45153025  T
Q  286 agtcaattctgattgagttctattctatcatagtatcacttccctccttgtcataatttcagcatataagtatagactgcatgcctgccatttatttcca 385  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  45153026 agtcaattctgattgagttctattctatcatagtatcactttcctcctcgtcataatttcagcttataagtatagactgcatgcctgccatttatttcca 45153125  T
Q  386 tgcatttggcttttatctttatatt 410  Q
    |||| ||||||||| ||||||||||    
T  45153126 tgcaattggcttttgtctttatatt 45153150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 43848069 - 43848021
Alignment:
Q  72 agctatcagctatctgctatttttaccaaacagagccatacttttttat 120  Q
    |||||||||||||| |||||||||||||||||||||| |||| ||||||    
T  43848069 agctatcagctatccgctatttttaccaaacagagccttactattttat 43848021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 45140869 - 45140829
Alignment:
Q  71 aagctatcagctatctgctatttttaccaaacagagccata 111  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  45140869 aagctatcagctatccgctatttttaccaaacagagccata 45140829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 69 - 108
Target Start/End: Complemental strand, 39319469 - 39319430
Alignment:
Q  69 ataagctatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  39319469 ataagctatcagctatccgctatttttaccaaacagagcc 39319430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 9211768 - 9211822
Alignment:
Q  50 ctatcatcagtcattagcgataagctatcagctatctgctatttttaccaaacag 104  Q
    |||| ||||||||| ||| |||||||||||| |||| ||||||||||||||||||    
T  9211768 ctattatcagtcatcagctataagctatcagttatccgctatttttaccaaacag 9211822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 7379868 - 7379921
Alignment:
Q  55 atcagtcattagcgataagctatcagctatctgctatttttaccaaacagagcc 108  Q
    |||||| || ||| ||||||||||||||||| |||||||||| |||||||||||    
T  7379868 atcagttataagctataagctatcagctatccgctatttttatcaaacagagcc 7379921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 71 - 108
Target Start/End: Original strand, 31497448 - 31497485
Alignment:
Q  71 aagctatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  31497448 aagctatcagctatccgctatttttaccaaacagagcc 31497485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 11740513 - 11740473
Alignment:
Q  71 aagctatcagctatctgctatttttaccaaacagagccata 111  Q
    ||||||||||||||| ||||||||||||||| |||||||||    
T  11740513 aagctatcagctatccgctatttttaccaaatagagccata 11740473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 111
Target Start/End: Original strand, 32541975 - 32542011
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagccata 111  Q
    ||||||||||| |||||||||||||||||||||||||    
T  32541975 tatcagctatccgctatttttaccaaacagagccata 32542011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 104
Target Start/End: Original strand, 44264316 - 44264376
Alignment:
Q  44 aactatctatcatcagtcattagcgataagctatcagctatctgctatttttaccaaacag 104  Q
    |||||||  |||||||  || ||| ||||||||||||||||| ||||||||||||||||||    
T  44264316 aactatcagtcatcagctatcagctataagctatcagctatccgctatttttaccaaacag 44264376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 117
Target Start/End: Complemental strand, 44826743 - 44826701
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagccatacttttt 117  Q
    ||||||||||| |||||||||||||||||||||| || |||||    
T  44826743 tatcagctatccgctatttttaccaaacagagccctagttttt 44826701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 1893262 - 1893229
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  1893262 tatcagctatccgctatttttaccaaacagagcc 1893229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 8435845 - 8435812
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  8435845 tatcagctatccgctatttttaccaaacagagcc 8435812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 17116299 - 17116332
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  17116299 tatcagctatccgctatttttaccaaacagagcc 17116332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 25024139 - 25024172
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  25024139 tatcagctatccgctatttttaccaaacagagcc 25024172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 31582507 - 31582540
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  31582507 tatcagctatccgctatttttaccaaacagagcc 31582540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 31687444 - 31687411
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  31687444 tatcagctatccgctatttttaccaaacagagcc 31687411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 41693405 - 41693372
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  41693405 tatcagctatccgctatttttaccaaacagagcc 41693372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 111
Target Start/End: Original strand, 8271650 - 8271686
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagccata 111  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  8271650 tatcagctatccgctattttcaccaaacagagccata 8271686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 3107348 - 3107269
Alignment:
Q  1 tagttgatccgctaagtttaccaaaaacgtcatttagcttatcaactatctatcatcagtcattagcgataagctatcag 80  Q
    ||||||| ||||||| ||||||||| || ||| ||||||||||| ||||| |||||||||||| ||| ||||||||||||    
T  3107348 tagttgagccgctaattttaccaaacacttcaattagcttatcagctatcaatcatcagtcatcagctataagctatcag 3107269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 111
Target Start/End: Complemental strand, 6709080 - 6709044
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagccata 111  Q
    ||||||||||| |||||||||||||||||||||||||    
T  6709080 tatcagctatccgctatttttaccaaacagagccata 6709044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 106
Target Start/End: Complemental strand, 30810580 - 30810545
Alignment:
Q  71 aagctatcagctatctgctatttttaccaaacagag 106  Q
    ||||||||||||||| ||||||||||||||||||||    
T  30810580 aagctatcagctatccgctatttttaccaaacagag 30810545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 109
Target Start/End: Complemental strand, 34232255 - 34232221
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcca 109  Q
    ||||||||||| |||||||||||||||||||||||    
T  34232255 tatcagctatccgctatttttaccaaacagagcca 34232221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 559094 - 559127
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  559094 tatcagctatccgctatttttaccaaacagagcc 559127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 1805754 - 1805721
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  1805754 tatcagctatccgctatttttaccaaacagagcc 1805721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 2443207 - 2443240
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  2443207 tatcagctatccgctatttttaccaaacagagcc 2443240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 108
Target Start/End: Original strand, 10856871 - 10856908
Alignment:
Q  71 aagctatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||||||| ||||||||||||||||| ||||    
T  10856871 aagctatcagctatccgctatttttaccaaacaaagcc 10856908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 12432058 - 12432025
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  12432058 tatcagctatccgctatttttaccaaacagagcc 12432025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 27719975 - 27719942
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  27719975 tatcagctatccgctatttttaccaaacagagcc 27719942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 28721148 - 28721115
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  28721148 tatcagctatccgctatttttaccaaacagagcc 28721115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 32732566 - 32732599
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  32732566 tatcagctatccgctatttttaccaaacagagcc 32732599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 34684405 - 34684372
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  34684405 tatcagctatccgctatttttaccaaacagagcc 34684372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 107
Target Start/End: Complemental strand, 31451335 - 31451303
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagc 107  Q
    ||||||||||| |||||||||||||||||||||    
T  31451335 tatcagctatccgctatttttaccaaacagagc 31451303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 55 - 110
Target Start/End: Complemental strand, 18346798 - 18346743
Alignment:
Q  55 atcagtcattagcgataagctatcagctatctgctatttttaccaaacagagccat 110  Q
    ||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||    
T  18346798 atcagtcatcagctataagctatcagctatccgctatttttaccaaacagagccat 18346743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 2022755 - 2022660
Alignment:
Q  9 ccgctaagtttaccaaaaacgtcatttagcttatcaactatctatcatcagtcattagcgataagctatcagctatctgctatttttaccaaacaga 105  Q
    ||||||| ||||||||| || ||| ||||||||||| |||| ||||||||||||| ||| || ||  |||||| ||| |||||||||||||||||||    
T  2022755 ccgctaattttaccaaacacttcaattagcttatcagctatatatcatcagtcatcagctatcagtcatcagc-atccgctatttttaccaaacaga 2022660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 2498642 - 2498682
Alignment:
Q  71 aagctatcagctatctgctatttttaccaaacagagccata 111  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  2498642 aagctatcagctatctgctatttttaccaaacagagtcata 2498682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 110
Target Start/End: Original strand, 38596821 - 38596878
Alignment:
Q  53 tcatcagtcattagcgataagctatcagctatctgctatttttaccaaacagagccat 110  Q
    ||||||||||| ||| ||||| |||||| |||| || |||||||||||||||||||||    
T  38596821 tcatcagtcatcagctataagttatcagttatccgcaatttttaccaaacagagccat 38596878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 28867891 - 28867855
Alignment:
Q  72 agctatcagctatctgctatttttaccaaacagagcc 108  Q
    |||||||||||||| ||||||||||||||||||||||    
T  28867891 agctatcagctatccgctatttttaccaaacagagcc 28867855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 31149826 - 31149790
Alignment:
Q  72 agctatcagctatctgctatttttaccaaacagagcc 108  Q
    |||||||||||||| ||||||||||||||||||||||    
T  31149826 agctatcagctatccgctatttttaccaaacagagcc 31149790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 52702423 - 52702367
Alignment:
Q  55 atcagtcattagcgataagctatcagctatctgctatttttaccaaacagagccata 111  Q
    ||||||||| ||| ||  ||||| ||||||| |||||||||||||||||||||||||    
T  52702423 atcagtcatcagctatcggctataagctatcagctatttttaccaaacagagccata 52702367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 110
Target Start/End: Original strand, 15314031 - 15314066
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagccat 110  Q
    ||||||||||| ||||||||||||||||||||||||    
T  15314031 tatcagctatccgctatttttaccaaacagagccat 15314066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 109
Target Start/End: Complemental strand, 7710344 - 7710310
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcca 109  Q
    ||||||||||| |||||||||||||||||||||||    
T  7710344 tatcagctatccgctatttttaccaaacagagcca 7710310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 109
Target Start/End: Complemental strand, 38966862 - 38966828
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcca 109  Q
    ||||||||||| |||||||||||||||||||||||    
T  38966862 tatcagctatccgctatttttaccaaacagagcca 38966828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 323626 - 323659
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  323626 tatcagctatccgctatttttaccaaacagagcc 323659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 1918834 - 1918867
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  1918834 tatcagctatccgctatttttaccaaacagagcc 1918867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 13120974 - 13120941
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  13120974 tatcagctatccgctatttttaccaaacagagcc 13120941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 19898275 - 19898242
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  19898275 tatcagctatccgctatttttaccaaacagagcc 19898242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 108
Target Start/End: Original strand, 23710776 - 23710813
Alignment:
Q  71 aagctatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||||||| | ||||||||||||||||||||    
T  23710776 aagctatcagctatccgttatttttaccaaacagagcc 23710813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 26205085 - 26205118
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  26205085 tatcagctatccgctatttttaccaaacagagcc 26205118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 29379788 - 29379821
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  29379788 tatcagctatccgctatttttaccaaacagagcc 29379821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 29586944 - 29586977
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  29586944 tatcagctatccgctatttttaccaaacagagcc 29586977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 29683519 - 29683486
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  29683519 tatcagctatccgctatttttaccaaacagagcc 29683486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 29703560 - 29703527
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  29703560 tatcagctatccgctatttttaccaaacagagcc 29703527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 30780077 - 30780110
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  30780077 tatcagctatccgctatttttaccaaacagagcc 30780110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 32367743 - 32367710
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  32367743 tatcagctatccgctatttttaccaaacagagcc 32367710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 33561234 - 33561201
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  33561234 tatcagctatccgctatttttaccaaacagagcc 33561201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 36300458 - 36300425
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  36300458 tatcagctatccgctatttttaccaaacagagcc 36300425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 36838056 - 36838023
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  36838056 tatcagctatccgctatttttaccaaacagagcc 36838023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 39827350 - 39827383
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  39827350 tatcagctatccgctatttttaccaaacagagcc 39827383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 41150601 - 41150568
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  41150601 tatcagctatccgctatttttaccaaacagagcc 41150568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 42063645 - 42063612
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  42063645 tatcagctatccgctatttttaccaaacagagcc 42063612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 44910608 - 44910641
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  44910608 tatcagctatccgctatttttaccaaacagagcc 44910641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 108
Target Start/End: Original strand, 46370465 - 46370502
Alignment:
Q  71 aagctatcagctatctgctatttttaccaaacagagcc 108  Q
    |||||||||||||||  |||||||||||||||||||||    
T  46370465 aagctatcagctatccactatttttaccaaacagagcc 46370502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 108
Target Start/End: Complemental strand, 49219826 - 49219789
Alignment:
Q  71 aagctatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  49219826 aagctatcaactatccgctatttttaccaaacagagcc 49219789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 3391756 - 3391840
Alignment:
Q  1 tagttgatccgctaagtttaccaaaaacgtcatttagcttatcaactatctatcatcagtcattagcgataagctatcagctatc 85  Q
    ||||||| ||||||| ||||||||| || ||| ||||||||| | |||||  |||| | |||| ||| |||||||||||| ||||    
T  3391756 tagttgaaccgctaattttaccaaacacttcaattagcttataagctatcagtcattaatcatcagctataagctatcagttatc 3391840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 85059 - 85109
Alignment:
Q  55 atcagtcattagcgataagctatcagctatctgctatttttaccaaacaga 105  Q
    ||||||||| ||| ||||||||||||||||| |||||||||||||||||||    
T  85059 atcagtcatcagctataagctatcagctatccgctatttttaccaaacaga 85109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 92876 - 92843
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  92876 tatcagctatccgctatttttaccaaacagagcc 92843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 27089071 - 27089029
Alignment:
Q  69 ataagctatcagctatctgctatttttaccaaacagagccata 111  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  27089071 ataagctatcagctatccgctatttttaccaaacagagccata 27089029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 27189230 - 27189272
Alignment:
Q  69 ataagctatcagctatctgctatttttaccaaacagagccata 111  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  27189230 ataagctatcagctatccgctatttttaccaaacagagccata 27189272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 113
Target Start/End: Original strand, 43254945 - 43254983
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagccatact 113  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  43254945 tatcagctatccgctatttttaccaaacagagccatact 43254983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 71 - 108
Target Start/End: Original strand, 9488161 - 9488198
Alignment:
Q  71 aagctatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  9488161 aagctatcagctatccgctatttttaccaaacagagcc 9488198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 71 - 108
Target Start/End: Complemental strand, 19831487 - 19831450
Alignment:
Q  71 aagctatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  19831487 aagctatcagctatccgctatttttaccaaacagagcc 19831450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 71 - 108
Target Start/End: Original strand, 36436884 - 36436921
Alignment:
Q  71 aagctatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  36436884 aagctatcagctatccgctatttttaccaaacagagcc 36436921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 111
Target Start/End: Complemental strand, 21254036 - 21254000
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagccata 111  Q
    ||||||||||| |||||||||||||||||||||||||    
T  21254036 tatcagctatccgctatttttaccaaacagagccata 21254000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 19756758 - 19756684
Alignment:
Q  17 tttaccaaaaacgtcatttagcttatcaactatctatcatcagtcattagcgataagctatcagctatctgctat 91  Q
    ||||||||| |  ||| ||||||||||| |||||  | ||||||||| ||| ||||||||||||||||| |||||    
T  19756758 tttaccaaacagttcaattagcttatcagctatcagttatcagtcatcagctataagctatcagctatcagctat 19756684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 117
Target Start/End: Complemental strand, 48831454 - 48831412
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagccatacttttt 117  Q
    ||||||||||| |||||||||||||||||||||| || |||||    
T  48831454 tatcagctatccgctatttttaccaaacagagccgtagttttt 48831412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 790642 - 790609
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  790642 tatcagctatccgctatttttaccaaacagagcc 790609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 108
Target Start/End: Original strand, 21375373 - 21375410
Alignment:
Q  71 aagctatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||||||  ||||||||||||||||||||||    
T  21375373 aagctatcagctataagctatttttaccaaacagagcc 21375410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 21745138 - 21745171
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  21745138 tatcagctatccgctatttttaccaaacagagcc 21745171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 24171502 - 24171591
Alignment:
Q  1 tagttgatccgctaagtttaccaaaaacgtcatttagcttatcaactatctatcatcagtcattagcgataagctatcagctatctgcta 90  Q
    ||||||| || |||| ||||||||| || ||| ||||||||||| |||||  | ||||| ||| ||| ||||||||| ||||||| ||||    
T  24171502 tagttgaaccactaattttaccaaacacttcaattagcttatcagctatcagttatcagccatcagctataagctataagctatccgcta 24171591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 31512036 - 31512069
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||| ||||||||||||||||||||||||||||    
T  31512036 tatcaactatctgctatttttaccaaacagagcc 31512069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 108
Target Start/End: Original strand, 33027609 - 33027646
Alignment:
Q  71 aagctatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||||||| | ||||||||||||||||||||    
T  33027609 aagctatcagctatccgttatttttaccaaacagagcc 33027646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 33203038 - 33203005
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  33203038 tatcagctatccgctatttttaccaaacagagcc 33203005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 36245777 - 36245744
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  36245777 tatcagctatccgctatttttaccaaacagagcc 36245744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 42375189 - 42375156
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  42375189 tatcagctatccgctatttttaccaaacagagcc 42375156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 42586782 - 42586749
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  42586782 tatcagctatccgctatttttaccaaacagagcc 42586749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 45686257 - 45686224
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  45686257 tatcagctatccgctatttttaccaaacagagcc 45686224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 107
Target Start/End: Complemental strand, 21739350 - 21739318
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagc 107  Q
    ||||||||||| |||||||||||||||||||||    
T  21739350 tatcagctatccgctatttttaccaaacagagc 21739318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 111
Target Start/End: Complemental strand, 40636554 - 40636518
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagccata 111  Q
    |||||| |||| |||||||||||||||||||||||||    
T  40636554 tatcagttatccgctatttttaccaaacagagccata 40636518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 36)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 23921758 - 23921808
Alignment:
Q  55 atcagtcattagcgataagctatcagctatctgctatttttaccaaacaga 105  Q
    ||||||||| ||| ||||||||||||||||| |||||||||||||||||||    
T  23921758 atcagtcatcagctataagctatcagctatccgctatttttaccaaacaga 23921808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 5522086 - 5522165
Alignment:
Q  1 tagttgatccgctaagtttaccaaaaacgtcatttagcttatcaactatctatcatcagtcattagcgataagctatcag 80  Q
    ||||||| ||||||| ||||||||| || ||| ||| |||||||||||||  ||||||||||| ||| |||| |||||||    
T  5522086 tagttgagccgctaattttaccaaacacttcaattaacttatcaactatcagtcatcagtcatcagctataaactatcag 5522165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 110
Target Start/End: Original strand, 7652307 - 7652346
Alignment:
Q  71 aagctatcagctatctgctatttttaccaaacagagccat 110  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  7652307 aagctatcagctatccgctatttttaccaaacagagccat 7652346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 9160063 - 9160030
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||||||||||||||||||||||||||    
T  9160063 tatcagctatctgctatttttaccaaacagagcc 9160030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 11099973 - 11099920
Alignment:
Q  55 atcagtcattagcgataagctatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||| ||| ||||||||||||||||| ||||||||||| ||||| ||||    
T  11099973 atcagtcatcagctataagctatcagctatcagctatttttactaaacaaagcc 11099920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 31408771 - 31408848
Alignment:
Q  1 tagttgatccgctaagtttaccaaaaacgtcatttagcttatcaactatctatcatcagtcattagcgataagctatc 78  Q
    ||||||| ||| ||| ||||||||| || ||| ||||||||||| ||||| |||||| ||||| ||| ||||||||||    
T  31408771 tagttgaaccgttaattttaccaaatacttcaattagcttatcagctatcaatcatcggtcatcagctataagctatc 31408848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 11663302 - 11663262
Alignment:
Q  71 aagctatcagctatctgctatttttaccaaacagagccata 111  Q
    |||||||| |||||||||||||||||| |||||||||||||    
T  11663302 aagctatcggctatctgctatttttacaaaacagagccata 11663262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 111
Target Start/End: Original strand, 12714065 - 12714101
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagccata 111  Q
    ||||||||||| |||||||||||||||||||||||||    
T  12714065 tatcagctatccgctatttttaccaaacagagccata 12714101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 111
Target Start/End: Original strand, 12775293 - 12775329
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagccata 111  Q
    ||||||||||| |||||||||||||||||||||||||    
T  12775293 tatcagctatccgctatttttaccaaacagagccata 12775329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 111
Target Start/End: Complemental strand, 13156272 - 13156236
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagccata 111  Q
    ||||||||||| |||||||||||||||||||||||||    
T  13156272 tatcagctatccgctatttttaccaaacagagccata 13156236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 111
Target Start/End: Complemental strand, 27868223 - 27868188
Alignment:
Q  76 atcagctatctgctatttttaccaaacagagccata 111  Q
    |||||||||| |||||||||||||||||||||||||    
T  27868223 atcagctatccgctatttttaccaaacagagccata 27868188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 110
Target Start/End: Original strand, 43403246 - 43403281
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagccat 110  Q
    ||||||||||| ||||||||||||||||||||||||    
T  43403246 tatcagctatccgctatttttaccaaacagagccat 43403281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 109
Target Start/End: Complemental strand, 5381219 - 5381185
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcca 109  Q
    ||||||||||| |||||||||||||||||||||||    
T  5381219 tatcagctatccgctatttttaccaaacagagcca 5381185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 109
Target Start/End: Complemental strand, 6603297 - 6603263
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcca 109  Q
    ||||||||||| |||||||||||||||||||||||    
T  6603297 tatcagctatccgctatttttaccaaacagagcca 6603263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 7897144 - 7897233
Alignment:
Q  1 tagttgatccgctaagtttaccaaaaacgtcatttagcttatcaactatctatcatcagtcattagcgataagctatcagctatctgctat 91  Q
    ||||||| ||||||| |||| |||| || ||| |||||||||||||||||  ||||||| ||| ||  ||||||||||||| ||| |||||    
T  7897144 tagttgaaccgctaattttatcaaacacttcaattagcttatcaactatcagtcatcag-catcagttataagctatcagccatcagctat 7897233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 109
Target Start/End: Complemental strand, 19955693 - 19955659
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcca 109  Q
    ||||||||||| |||||||||||||||||||||||    
T  19955693 tatcagctatccgctatttttaccaaacagagcca 19955659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 109
Target Start/End: Original strand, 24801575 - 24801609
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcca 109  Q
    ||||||||||| |||||||||||||||||||||||    
T  24801575 tatcagctatccgctatttttaccaaacagagcca 24801609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 105
Target Start/End: Complemental strand, 32381050 - 32381016
Alignment:
Q  71 aagctatcagctatctgctatttttaccaaacaga 105  Q
    ||||||||||||||| |||||||||||||||||||    
T  32381050 aagctatcagctatccgctatttttaccaaacaga 32381016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 108
Target Start/End: Complemental strand, 1710592 - 1710555
Alignment:
Q  71 aagctatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  1710592 aagctatcaactatccgctatttttaccaaacagagcc 1710555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 2672185 - 2672218
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  2672185 tatcagctatccgctatttttaccaaacagagcc 2672218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 5997281 - 5997248
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  5997281 tatcagctatccgctatttttaccaaacagagcc 5997248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 8023319 - 8023286
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  8023319 tatcagctatccgctatttttaccaaacagagcc 8023286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 8285589 - 8285622
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  8285589 tatcagctatccgctatttttaccaaacagagcc 8285622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 11061853 - 11061820
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  11061853 tatcagctatccgctatttttaccaaacagagcc 11061820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 13227936 - 13227903
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  13227936 tatcagctatccgctatttttaccaaacagagcc 13227903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 14646750 - 14646717
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  14646750 tatcagctatccgctatttttaccaaacagagcc 14646717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 15531215 - 15531248
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  15531215 tatcagctatccgctatttttaccaaacagagcc 15531248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 16856354 - 16856321
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  16856354 tatcagctatccgctatttttaccaaacagagcc 16856321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 19526508 - 19526541
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  19526508 tatcagctatccgctatttttaccaaacagagcc 19526541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 32383614 - 32383647
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  32383614 tatcagctatccgctatttttaccaaacagagcc 32383647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 35235114 - 35235081
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  35235114 tatcagctatccgctatttttaccaaacagagcc 35235081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 35235928 - 35235895
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  35235928 tatcagctatccgctatttttaccaaacagagcc 35235895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 36686602 - 36686635
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  36686602 tatcagctatccgctatttttaccaaacagagcc 36686635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 39276182 - 39276215
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  39276182 tatcagctatccgctatttttaccaaacagagcc 39276215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 111
Target Start/End: Original strand, 15444212 - 15444248
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagccata 111  Q
    ||||||||||| ||||||||||||||||||| |||||    
T  15444212 tatcagctatccgctatttttaccaaacagaaccata 15444248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 111
Target Start/End: Original strand, 16475432 - 16475488
Alignment:
Q  55 atcagtcattagcgataagctatcagctatctgctatttttaccaaacagagccata 111  Q
    ||||||| | ||| ||||||||| |||||||  ||||||||||||||||||| ||||    
T  16475432 atcagtcgtcagctataagctataagctatccactatttttaccaaacagagtcata 16475488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 3919211 - 3919105
Alignment:
Q  1 tagttgatccgctaagtttaccaaaaacgtcatttagcttatcaactatctatcatcagtcattagcgataagctatcagctatctgctatttttaccaa 100  Q
    ||||||| ||||||| ||||||||| || |||  ||||||||||||||||  ||||||  ||| ||| |||||||||||||||||   | ||||||||||    
T  3919211 tagttgaaccgctaactttaccaaacacttcaactagcttatcaactatcagtcatca-acatcagctataagctatcagctatcccatgtttttaccaa 3919113  T
Q  101 acagagcc 108  Q
    ||| ||||    
T  3919112 acaaagcc 3919105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 40120645 - 40120700
Alignment:
Q  53 tcatcagtcattagcgataagctatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||| ||||||||||| ||||| | ||||||||||||||||||||    
T  40120645 tcatcagtcatcagctataagctatcaactatccgttatttttaccaaacagagcc 40120700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 71 - 108
Target Start/End: Original strand, 3010448 - 3010485
Alignment:
Q  71 aagctatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  3010448 aagctatcagctatccgctatttttaccaaacagagcc 3010485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 16398447 - 16398484
Alignment:
Q  69 ataagctatcagctatctgctatttttaccaaacagag 106  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  16398447 ataagctatcagctatccgctatttttaccaaacagag 16398484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 71 - 108
Target Start/End: Complemental strand, 23867286 - 23867249
Alignment:
Q  71 aagctatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  23867286 aagctatcagctatccgctatttttaccaaacagagcc 23867249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 37114670 - 37114637
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||||||||||||||||||||||||||    
T  37114670 tatcagctatctgctatttttaccaaacagagcc 37114637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 71 - 108
Target Start/End: Complemental strand, 47416919 - 47416882
Alignment:
Q  71 aagctatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  47416919 aagctatcagctatccgctatttttaccaaacagagcc 47416882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 111
Target Start/End: Complemental strand, 4938729 - 4938693
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagccata 111  Q
    ||||||||||| |||||||||||||||||||||||||    
T  4938729 tatcagctatccgctatttttaccaaacagagccata 4938693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 111
Target Start/End: Original strand, 18583603 - 18583639
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagccata 111  Q
    ||||||||||| |||||||||||||||||||||||||    
T  18583603 tatcagctatccgctatttttaccaaacagagccata 18583639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 111
Target Start/End: Complemental strand, 25439888 - 25439852
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagccata 111  Q
    ||||||||||| |||||||||||||||||||||||||    
T  25439888 tatcagctatccgctatttttaccaaacagagccata 25439852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 111
Target Start/End: Complemental strand, 33004454 - 33004418
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagccata 111  Q
    ||||||||||| |||||||||||||||||||||||||    
T  33004454 tatcagctatccgctatttttaccaaacagagccata 33004418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 110
Target Start/End: Original strand, 11601450 - 11601485
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagccat 110  Q
    ||||||||||| ||||||||||||||||||||||||    
T  11601450 tatcagctatccgctatttttaccaaacagagccat 11601485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 110
Target Start/End: Original strand, 45906912 - 45906947
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagccat 110  Q
    ||||||||||| ||||||||||||||||||||||||    
T  45906912 tatcagctatccgctatttttaccaaacagagccat 45906947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 100
Target Start/End: Complemental strand, 56544981 - 56544950
Alignment:
Q  69 ataagctatcagctatctgctatttttaccaa 100  Q
    ||||||||||||||||||||||||||||||||    
T  56544981 ataagctatcagctatctgctatttttaccaa 56544950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 109
Target Start/End: Complemental strand, 24953577 - 24953523
Alignment:
Q  55 atcagtcattagcgataagctatcagctatctgctatttttaccaaacagagcca 109  Q
    ||||| ||| ||| ||||||||| ||||||| |||||||||| ||||||||||||    
T  24953577 atcagccatcagctataagctataagctatccgctatttttatcaaacagagcca 24953523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 109
Target Start/End: Complemental strand, 27397133 - 27397099
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcca 109  Q
    ||||||||||| |||||||||||||||||||||||    
T  27397133 tatcagctatccgctatttttaccaaacagagcca 27397099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 109
Target Start/End: Original strand, 29414276 - 29414310
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcca 109  Q
    ||||||||||| |||||||||||||||||||||||    
T  29414276 tatcagctatccgctatttttaccaaacagagcca 29414310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 105
Target Start/End: Complemental strand, 35821663 - 35821629
Alignment:
Q  71 aagctatcagctatctgctatttttaccaaacaga 105  Q
    ||||||||||||||| |||||||||||||||||||    
T  35821663 aagctatcagctatccgctatttttaccaaacaga 35821629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 4392101 - 4392068
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  4392101 tatcagctatccgctatttttaccaaacagagcc 4392068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 7707151 - 7707184
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  7707151 tatcagctatccgctatttttaccaaacagagcc 7707184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 8942653 - 8942686
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  8942653 tatcagctatccgctatttttaccaaacagagcc 8942686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 11151299 - 11151266
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  11151299 tatcagctatccgctatttttaccaaacagagcc 11151266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 21370579 - 21370612
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  21370579 tatcagctatccgctatttttaccaaacagagcc 21370612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 22037728 - 22037695
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  22037728 tatcagctatccgctatttttaccaaacagagcc 22037695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 27185003 - 27184970
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  27185003 tatcagctatccgctatttttaccaaacagagcc 27184970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 31679629 - 31679662
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  31679629 tatcagctatccgctatttttaccaaacagagcc 31679662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 42117618 - 42117651
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  42117618 tatcagctatccgctatttttaccaaacagagcc 42117651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 43225096 - 43225063
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  43225096 tatcagctatccgctatttttaccaaacagagcc 43225063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 53407933 - 53407966
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  53407933 tatcagctatccgctatttttaccaaacagagcc 53407966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 56373222 - 56373255
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  56373222 tatcagctatccgctatttttaccaaacagagcc 56373255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 111
Target Start/End: Original strand, 33116843 - 33116879
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagccata 111  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  33116843 tatcagctatccgctatttttaccaaacagagtcata 33116879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 103
Target Start/End: Complemental strand, 36007409 - 36007377
Alignment:
Q  71 aagctatcagctatctgctatttttaccaaaca 103  Q
    ||||||||||||||| |||||||||||||||||    
T  36007409 aagctatcagctatccgctatttttaccaaaca 36007377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 111
Target Start/End: Original strand, 37971079 - 37971115
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagccata 111  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  37971079 tatcagctatccgctatttttaccaaacaaagccata 37971115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 69 - 108
Target Start/End: Complemental strand, 2265526 - 2265487
Alignment:
Q  69 ataagctatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  2265526 ataagctatcagctatccgctatttttaccaaacagagcc 2265487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 69 - 108
Target Start/End: Complemental strand, 9263706 - 9263667
Alignment:
Q  69 ataagctatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  9263706 ataagctatcagctatccgctatttttaccaaacagagcc 9263667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 69 - 108
Target Start/End: Original strand, 16487642 - 16487681
Alignment:
Q  69 ataagctatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  16487642 ataagctatcagctatccgctatttttaccaaacagagcc 16487681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 71 - 108
Target Start/End: Original strand, 3378132 - 3378169
Alignment:
Q  71 aagctatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  3378132 aagctatcagctatccgctatttttaccaaacagagcc 3378169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 71 - 108
Target Start/End: Original strand, 8340549 - 8340586
Alignment:
Q  71 aagctatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  8340549 aagctatcagctatccgctatttttaccaaacagagcc 8340586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 71 - 108
Target Start/End: Complemental strand, 17263157 - 17263120
Alignment:
Q  71 aagctatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  17263157 aagctatcagctatccgctatttttaccaaacagagcc 17263120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 41796104 - 41796071
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||||||||||||||||||||||||||    
T  41796104 tatcagctatctgctatttttaccaaacagagcc 41796071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 71 - 108
Target Start/End: Original strand, 44276532 - 44276569
Alignment:
Q  71 aagctatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  44276532 aagctatcagctatccgctatttttaccaaacagagcc 44276569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 111
Target Start/End: Complemental strand, 7399651 - 7399615
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagccata 111  Q
    ||||||||||| |||||||||||||||||||||||||    
T  7399651 tatcagctatccgctatttttaccaaacagagccata 7399615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 39675994 - 39676034
Alignment:
Q  69 ataagctatcagctatctgctatttttaccaaacagagcca 109  Q
    ||||||||||||||||| ||||||||||||||| |||||||    
T  39675994 ataagctatcagctatccgctatttttaccaaatagagcca 39676034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 108
Target Start/End: Complemental strand, 40868732 - 40868693
Alignment:
Q  69 ataagctatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||||||||| |||||||||| |||||||||||    
T  40868732 ataagctatcagctatccgctatttttatcaaacagagcc 40868693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 109
Target Start/End: Complemental strand, 13527300 - 13527266
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcca 109  Q
    ||||||||||| |||||||||||||||||||||||    
T  13527300 tatcagctatccgctatttttaccaaacagagcca 13527266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 109
Target Start/End: Complemental strand, 36711871 - 36711837
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcca 109  Q
    ||||||||||| |||||||||||||||||||||||    
T  36711871 tatcagctatccgctatttttaccaaacagagcca 36711837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 2545785 - 2545752
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  2545785 tatcagctatccgctatttttaccaaacagagcc 2545752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 4452888 - 4452855
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  4452888 tatcagctatccgctatttttaccaaacagagcc 4452855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 5040546 - 5040579
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  5040546 tatcagctatccgctatttttaccaaacagagcc 5040579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 8687760 - 8687727
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  8687760 tatcagctatccgctatttttaccaaacagagcc 8687727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 8705870 - 8705837
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  8705870 tatcagctatccgctatttttaccaaacagagcc 8705837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 9887745 - 9887778
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  9887745 tatcagctatccgctatttttaccaaacagagcc 9887778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 15569956 - 15569989
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  15569956 tatcagctatccgctatttttaccaaacagagcc 15569989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 108
Target Start/End: Original strand, 18212851 - 18212888
Alignment:
Q  71 aagctatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||||||| | ||||||||||||||||||||    
T  18212851 aagctatcagctatcagttatttttaccaaacagagcc 18212888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 21866022 - 21866055
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  21866022 tatcagctatccgctatttttaccaaacagagcc 21866055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 24401481 - 24401448
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  24401481 tatcagctatccgctatttttaccaaacagagcc 24401448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 28382012 - 28381979
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  28382012 tatcagctatccgctatttttaccaaacagagcc 28381979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 38578412 - 38578371
Alignment:
Q  71 aagctatcagctatctgctattttt-accaaacagagccata 111  Q
    ||||||||||||||| ||||||||| ||||||||||||||||    
T  38578412 aagctatcagctatccgctattttttaccaaacagagccata 38578371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 41323564 - 41323597
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  41323564 tatcagctatccgctatttttaccaaacagagcc 41323597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 43136413 - 43136446
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  43136413 tatcagctatccgctatttttaccaaacagagcc 43136446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 107
Target Start/End: Original strand, 18710930 - 18710962
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagc 107  Q
    ||||||||||| |||||||||||||||||||||    
T  18710930 tatcagctatccgctatttttaccaaacagagc 18710962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1526 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold1526
Description:

Target: scaffold1526; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 71 - 108
Target Start/End: Complemental strand, 1401 - 1364
Alignment:
Q  71 aagctatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  1401 aagctatcagctatccgctatttttaccaaacagagcc 1364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 71 - 108
Target Start/End: Complemental strand, 37713353 - 37713316
Alignment:
Q  71 aagctatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  37713353 aagctatcagctatccgctatttttaccaaacagagcc 37713316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 106
Target Start/End: Original strand, 42218382 - 42218435
Alignment:
Q  53 tcatcagtcattagcgataagctatcagctatctgctatttttaccaaacagag 106  Q
    |||||||  |||||| ||||||||||||||||| ||| ||||||||||||||||    
T  42218382 tcatcagctattagctataagctatcagctatccgctgtttttaccaaacagag 42218435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 16126560 - 16126520
Alignment:
Q  71 aagctatcagctatctgctatttttaccaaacagagccata 111  Q
    ||||||||||||||| ||||||||||| |||||||||||||    
T  16126560 aagctatcagctatccgctatttttacgaaacagagccata 16126520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 44748241 - 44748201
Alignment:
Q  71 aagctatcagctatctgctatttttaccaaacagagccata 111  Q
    ||||||||||||||| |||||||||| ||||||||||||||    
T  44748241 aagctatcagctatccgctatttttatcaaacagagccata 44748201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 107
Target Start/End: Complemental strand, 50316536 - 50316504
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagc 107  Q
    |||||||||||||||||||||||||||||||||    
T  50316536 tatcagctatctgctatttttaccaaacagagc 50316504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 110
Target Start/End: Original strand, 30549292 - 30549331
Alignment:
Q  71 aagctatcagctatctgctatttttaccaaacagagccat 110  Q
    ||||||||||||||| ||||||||||||||||| ||||||    
T  30549292 aagctatcagctatccgctatttttaccaaacaaagccat 30549331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 108
Target Start/End: Complemental strand, 54541427 - 54541388
Alignment:
Q  69 ataagctatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||||||||| | ||||||||||||||||||||    
T  54541427 ataagctatcagctatccgttatttttaccaaacagagcc 54541388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 109
Target Start/End: Original strand, 52795669 - 52795707
Alignment:
Q  71 aagctatcagctatctgctatttttaccaaacagagcca 109  Q
    ||||||||| ||||| |||||||||||||||||||||||    
T  52795669 aagctatcatctatccgctatttttaccaaacagagcca 52795707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 2579374 - 2579341
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  2579374 tatcagctatccgctatttttaccaaacagagcc 2579341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 2852678 - 2852711
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  2852678 tatcagctatccgctatttttaccaaacagagcc 2852711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 29080652 - 29080619
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  29080652 tatcagctatccgctatttttaccaaacagagcc 29080619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 29717599 - 29717566
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  29717599 tatcagctatccgctatttttaccaaacagagcc 29717566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 33392466 - 33392499
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  33392466 tatcagctatccgctatttttaccaaacagagcc 33392499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 37089042 - 37089075
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  37089042 tatcagctatccgctatttttaccaaacagagcc 37089075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 37528118 - 37528085
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  37528118 tatcagctatccgctatttttaccaaacagagcc 37528085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 38186544 - 38186577
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  38186544 tatcagctatccgctatttttaccaaacagagcc 38186577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 38891400 - 38891367
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  38891400 tatcagctatccgctatttttaccaaacagagcc 38891367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 108
Target Start/End: Original strand, 39470619 - 39470656
Alignment:
Q  71 aagctatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  39470619 aagctatcatctatccgctatttttaccaaacagagcc 39470656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 40479439 - 40479406
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  40479439 tatcagctatccgctatttttaccaaacagagcc 40479406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 40562710 - 40562677
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  40562710 tatcagctatccgctatttttaccaaacagagcc 40562677  T

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Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 45344414 - 45344381
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  45344414 tatcagctatccgctatttttaccaaacagagcc 45344381  T

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Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 108
Target Start/End: Complemental strand, 49852653 - 49852616
Alignment:
Q  71 aagctatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  49852653 aagctatcagctatccgctatttttaccaaacggagcc 49852616  T

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Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 108
Target Start/End: Original strand, 50500554 - 50500591
Alignment:
Q  71 aagctatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||||||| |||||||| |||||||||||||    
T  50500554 aagctatcagctatccgctattttaaccaaacagagcc 50500591  T

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Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 52858677 - 52858710
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  52858677 tatcagctatccgctatttttaccaaacagagcc 52858710  T

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Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 54671603 - 54671570
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  54671603 tatcagctatccgctatttttaccaaacagagcc 54671570  T

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Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 55227159 - 55227126
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  55227159 tatcagctatccgctatttttaccaaacagagcc 55227126  T

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Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 111
Target Start/End: Original strand, 892756 - 892792
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagccata 111  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  892756 tatcagctatccgctatttttaccgaacagagccata 892792  T

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Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 8873608 - 8873644
Alignment:
Q  72 agctatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  8873608 agctaacagctatccgctatttttaccaaacagagcc 8873644  T

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Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 111
Target Start/End: Original strand, 35500414 - 35500450
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagccata 111  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  35500414 tatcagctatccgctatttttaccaaacagagtcata 35500450  T

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Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 107
Target Start/End: Original strand, 45369679 - 45369711
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagc 107  Q
    ||||||||||| |||||||||||||||||||||    
T  45369679 tatcagctatccgctatttttaccaaacagagc 45369711  T

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Target: scaffold0031 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 111
Target Start/End: Complemental strand, 129536 - 129500
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagccata 111  Q
    ||||||||||| |||||||||||||||||||||||||    
T  129536 tatcagctatccgctatttttaccaaacagagccata 129500  T

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Target: scaffold0027 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 111
Target Start/End: Complemental strand, 41096 - 41060
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagccata 111  Q
    ||||||||||| |||||||||||||||||||||||||    
T  41096 tatcagctatccgctatttttaccaaacagagccata 41060  T

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Target: scaffold0197 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 114
Target Start/End: Complemental strand, 28397 - 28358
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagccatactt 114  Q
    ||||||||||| |||||||||||||||||||||| |||||    
T  28397 tatcagctatccgctatttttaccaaacagagccttactt 28358  T

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Target: scaffold0122 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 109
Target Start/End: Complemental strand, 11816 - 11782
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcca 109  Q
    ||||||||||| |||||||||||||||||||||||    
T  11816 tatcagctatccgctatttttaccaaacagagcca 11782  T

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Target: scaffold0362 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 6182 - 6215
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  6182 tatcagctatccgctatttttaccaaacagagcc 6215  T

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Target: scaffold0349 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 9397 - 9364
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  9397 tatcagctatccgctatttttaccaaacagagcc 9364  T

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Target: scaffold0246 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 7810 - 7843
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  7810 tatcagctatccgctatttttaccaaacagagcc 7843  T

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Target: scaffold0116 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 25677 - 25710
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  25677 tatcagctatccgctatttttaccaaacagagcc 25710  T

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Target: scaffold0002 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 432033 - 432066
Alignment:
Q  75 tatcagctatctgctatttttaccaaacagagcc 108  Q
    ||||||||||| ||||||||||||||||||||||    
T  432033 tatcagctatccgctatttttaccaaacagagcc 432066  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 417965 - 417917
Alignment:
Q  55 atcagtcattagcgataagctatcagctatctgctatttttaccaaaca 103  Q
    ||||||||| ||| ||||||||||||||||  ||| |||||||||||||    
T  417965 atcagtcatcagctataagctatcagctattcgctgtttttaccaaaca 417917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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