View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5097_low_6 (Length: 407)
Name: NF5097_low_6
Description: NF5097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5097_low_6 |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 29009645 - 29009238
Alignment:
| Q |
1 |
cgtgaaatctcctcagagccacatccatgctatgcatgaccatttataagagctgtccatgctgct---acgttgggtgaaaagatgctggtgaatgacc |
97 |
Q |
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| T |
29009645 |
cgtgaaatcgcctcagatc-acatccatggtatgcataaccatttataagagctgtccatgctgctgctacattgggtgaaaagatgctggtgaatgacc |
29009547 |
T |
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| Q |
98 |
tttgagcatcagccaaatgaccacatttggaatagaaatccacaagagcagttccaacgtaaacattttcctggtatggcgttttggctaagtgtgcatg |
197 |
Q |
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| T |
29009546 |
tttgagcatcagccaaatgaccacatttggaatagaaatccacaagagcagttccaacgtaaacattttcctggtatggcgttttggctaagtgtgcatg |
29009447 |
T |
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| Q |
198 |
aagcaactgtccttgttagaaaagaacagaggtatgcacaaccaccagataggacagagaatgttgatcttctatactcaactgaatatctgcgcatagt |
297 |
Q |
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| T |
29009446 |
aagcaactgtccttgtt-gaaaagaacagaggtatgcacaaccaccagataggacagagaatgttgatcttctatactcaactgaatatctgcgcatagt |
29009348 |
T |
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| Q |
298 |
cacatataatttcaatgcctcactgtgctgaccattatgaatgtaacccgacatcattgaattccacgatacacaatttctctcagccttagttttgtca |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
29009347 |
cacatataatttcaatgcctcactgtgctgaccattatgaatgtaacccgacatcattgaattccacgatacacaatttctctcacccttagttttgtca |
29009248 |
T |
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| Q |
398 |
aaaagcttca |
407 |
Q |
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| T |
29009247 |
aaaagcttca |
29009238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 34145753 - 34146158
Alignment:
| Q |
1 |
cgtgaaatctcctcagagccacatccatgctatgcatgaccatttataagagctgtccatgctgctacgttgggtgaaaagatgctggtgaatgaccttt |
100 |
Q |
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||||||||| ||||||| || |||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
34145753 |
cgtgaaatcgcctcagatccgcatccatggtatgcataaccatttataagagctgtccatgctgctacattgggtgaaaagatgctggtgaatgaccttt |
34145852 |
T |
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| Q |
101 |
gagcatcagccaaatgaccacatttggaatagaaatccacaagagcagttccaacgtaaacattttcctggtatggcgttttggctaagtgtgcatgaag |
200 |
Q |
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| T |
34145853 |
gagcatcggccaagtgaccacatttggaatagaaatccacaagagcagttccaacgtaaacattttcctggtatggcgttttggctaagtgtgcatgaag |
34145952 |
T |
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| Q |
201 |
caactgtccttgttagaaaagaacagaggtatgcacaaccaccagataggacagagaatgttgatcttctatactcaactgaatatctgcgcatagtcac |
300 |
Q |
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| T |
34145953 |
caactgtccttgtt-gaaaagaacagaggtatgcacaagcacgaaatagaacagagaatgttgatctgctatactcaactaaaaatctacgcatggtcac |
34146051 |
T |
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| Q |
301 |
atataatttcaatgcctcactgtgctgaccattatgaatgtaacccgacatcattgaattccacgatacacaatttctctcagccttagttttgtcaaaa |
400 |
Q |
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||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||| |
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| T |
34146052 |
gtataatttcaatgcctcgctgtgctcaccattatgaatgtaacccgacatcattgaattccacgttacacaatttctttcacccttagttttgtcaaaa |
34146151 |
T |
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| Q |
401 |
agcttca |
407 |
Q |
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| T |
34146152 |
agcttca |
34146158 |
T |
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