View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5098-Insertion-3 (Length: 1022)
Name: NF5098-Insertion-3
Description: NF5098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5098-Insertion-3 |
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Alignment Details
Target: chr8 (Bit Score: 462; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 178 - 680
Target Start/End: Complemental strand, 976075 - 975574
Alignment:
| Q |
178 |
ctgaatttcttattgctatctttgaaaaattaaacaatttaatgaatcaacttatgtgtccctcctttgtatttcttgagttcaaactcaaaaaggtgnn |
277 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
976075 |
ctgaatttcttattgctatctttgaaaaattaaacaatttaatgaatcaacttatgtgtccctcctttgtatttcttgagttcaaactcaaaaaggtgaa |
975976 |
T |
|
| Q |
278 |
nnnnntgcaatgaaatagagcattatttgacatttgataaactaggaatttgttatttgtataggagaacattcctattgatgaggtttttgataatctc |
377 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
975975 |
aaaaatgcaatgaaatagagcattatttgacaattgataaactaggaatttgttatttgtataggagaacattcctattgatgaggtttttgataatctc |
975876 |
T |
|
| Q |
378 |
aaatgcacaaaagaaggtttaacctgtgaggaagtacaggagaggctagagttgtttggatacaataaacttgaagaaaagaaggttaaaagctttactt |
477 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
975875 |
aaatgcacaaaagaaggtttaacctgtgaggaagtacaggagaggctagagttgtttggatacaataaacttgaagaaaagaaggttaaaagctttactt |
975776 |
T |
|
| Q |
478 |
cactgcttctagtttcttaacaatttgttgcttatttactgatagtttgtgtattattcttttcctgtgcaggaaagtaaaatactaaagtttttagggt |
577 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
975775 |
cactgcttctagtttcttaccaatttgttgcttatttactgatagtttgtgttttattcttttcctgtgcaggaaagtaaaatactaaagtttttagggt |
975676 |
T |
|
| Q |
578 |
ttatgtggaatcctttgtcatgggttatggaagctgctgctatcatggccattgctatggcacatggaggccgtaacatggatggaacggtaaaatttct |
677 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
975675 |
ttatgtggaatcctttgtcatgggttatggaagctgctgctatcatggccattgctatggcacatggaggccgtaacatggatggaacggt-aaatttct |
975577 |
T |
|
| Q |
678 |
tcc |
680 |
Q |
| |
|
||| |
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|
| T |
975576 |
tcc |
975574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 704 - 960
Target Start/End: Complemental strand, 975553 - 975297
Alignment:
| Q |
704 |
ccaatgtttttctctagctcaatttgtgtacaaacttgtaataactgtatttagttgtcatgtcaaactcacgtcggcgtctaacactcgtatgatatgt |
803 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
975553 |
ccaatgtttttctctagctcaatttgtgtacaaacttgtaataactgtatttagttgtcatgtcaaactcacgtcggcgtctaacactcgtatgatatgt |
975454 |
T |
|
| Q |
804 |
atccgacaacttagacaagtatcccaaatttctttctttgctctgatacaccttatacactcattggacacatctcaaacatgtatgaatgaacgaatga |
903 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
975453 |
atccgacaacttagacaagtatcccaaatttctttctttgctctgatacaccttatacactcattggacacatctcaaacatgtatgaatgaacgaatga |
975354 |
T |
|
| Q |
904 |
gtgtaaaagactatcattttgtttcgaaatagaacaaattgctcaattttgattcac |
960 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
975353 |
gtgtgaaagactatcattttgtttcgaaatagaacaaattgctcaattttgattcac |
975297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 145; E-Value: 9e-76
Query Start/End: Original strand, 7 - 151
Target Start/End: Complemental strand, 976230 - 976086
Alignment:
| Q |
7 |
agtatgtttgtctagcattaatttacttctccttcatttggaaatgtaacatatcttaatttttacatgcaagtttcccacatgattactatgatgttga |
106 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
976230 |
agtatgtttgtctagcattaatttacttctccttcatttggaaatgtaacatatcttaatttttacatgcaagtttcccacatgattactatgatgttga |
976131 |
T |
|
| Q |
107 |
ttaaacagtagggaaattgtctagaaactaattagcctttgctat |
151 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
976130 |
ttaaacagtagggaaattgtctagaaactaattagcctttgctat |
976086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 568 - 638
Target Start/End: Original strand, 26787239 - 26787309
Alignment:
| Q |
568 |
tttttagggtttatgtggaatcctttgtcatgggttatggaagctgctgctatcatggccattgctatggc |
638 |
Q |
| |
|
||||| || ||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
26787239 |
tttttgggttttatgtggaaccctttatcatgggttatggaagctgctgctattatggccattgctttggc |
26787309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 7e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 565 - 638
Target Start/End: Original strand, 1459366 - 1459439
Alignment:
| Q |
565 |
aagtttttagggtttatgtggaatcctttgtcatgggttatggaagctgctgctatcatggccattgctatggc |
638 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||| |
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|
| T |
1459366 |
aagtttttaggttttatgtggaaccctttgtcatgggttatggaagctgctgctattatggccattgctttggc |
1459439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 565 - 638
Target Start/End: Complemental strand, 1499377 - 1499304
Alignment:
| Q |
565 |
aagtttttagggtttatgtggaatcctttgtcatgggttatggaagctgctgctatcatggccattgctatggc |
638 |
Q |
| |
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|||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1499377 |
aagtttttgggttttatgtggaatcctttatcatgggttatggaagctgctgctatcatggccattgctttggc |
1499304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 565 - 638
Target Start/End: Original strand, 50273352 - 50273425
Alignment:
| Q |
565 |
aagtttttagggtttatgtggaatcctttgtcatgggttatggaagctgctgctatcatggccattgctatggc |
638 |
Q |
| |
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||||| ||||| |||||||||||||| || |||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
50273352 |
aagttcttaggatttatgtggaatccattatcatgggttatggaagctgctgctattatggccattgctttggc |
50273425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 565 - 647
Target Start/End: Original strand, 3151601 - 3151683
Alignment:
| Q |
565 |
aagtttttagggtttatgtggaatcctttgtcatgggttatggaagctgctgctatcatggccattgctatggcacatggagg |
647 |
Q |
| |
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|||||||| || ||||||||||||||| | |||||||| ||||||||||| || |||||||| |||||| |||| ||||||| |
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|
| T |
3151601 |
aagtttttgggatttatgtggaatcctctttcatgggtgatggaagctgcagcaatcatggctattgctttggccaatggagg |
3151683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.000000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 577 - 647
Target Start/End: Complemental strand, 45200238 - 45200168
Alignment:
| Q |
577 |
tttatgtggaatcctttgtcatgggttatggaagctgctgctatcatggccattgctatggcacatggagg |
647 |
Q |
| |
|
|||||||||||||| | |||||||| ||||||||||||||||||||||| ||||| ||||| ||||||| |
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|
| T |
45200238 |
tttatgtggaatcccctctcatgggtcatggaagctgctgctatcatggctattgcattggcaaatggagg |
45200168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 565 - 631
Target Start/End: Complemental strand, 21983281 - 21983215
Alignment:
| Q |
565 |
aagtttttagggtttatgtggaatcctttgtcatgggttatggaagctgctgctatcatggccattg |
631 |
Q |
| |
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|||||||| || |||||||||||||| || |||||||| ||||| || ||||| ||||||||||||| |
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|
| T |
21983281 |
aagtttttgggttttatgtggaatccattatcatgggtcatggaggcagctgcaatcatggccattg |
21983215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 565 - 633
Target Start/End: Original strand, 15866279 - 15866347
Alignment:
| Q |
565 |
aagtttttagggtttatgtggaatcctttgtcatgggttatggaagctgctgctatcatggccattgct |
633 |
Q |
| |
|
|||||| | ||||||||||||||||| || |||||||| ||||||||||| ||| | ||||| |||||| |
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|
| T |
15866279 |
aagtttcttgggtttatgtggaatccattatcatgggtgatggaagctgcagctttaatggcaattgct |
15866347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 547 - 631
Target Start/End: Complemental strand, 53077981 - 53077897
Alignment:
| Q |
547 |
caggaaagtaaaatactaaagtttttagggtttatgtggaatcctttgtcatgggttatggaagctgctgctatcatggccattg |
631 |
Q |
| |
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||||| || ||||| || |||||| | ||||| ||||||||||||||||||||||| ||||||||||| ||| | ||||| |||| |
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| T |
53077981 |
caggacagcaaaattctcaagtttcttgggttcatgtggaatcctttgtcatgggtcatggaagctgcggctttgatggcaattg |
53077897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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