View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5098-Insertion-4 (Length: 1000)
Name: NF5098-Insertion-4
Description: NF5098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5098-Insertion-4 |
 | |
|
| [»] chr4 (5 HSPs) |
| |
|
| [»] scaffold1603 (1 HSPs) |
| | |
|
| [»] scaffold0027 (1 HSPs) |
| | |
|
| [»] scaffold0005 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 853; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 853; E-Value: 0
Query Start/End: Original strand, 8 - 1000
Target Start/End: Complemental strand, 23667069 - 23666074
Alignment:
| Q |
8 |
attttcgtaccatatattatagcttctgcaaaattagcccacactgctgtgttatttacttgcttctttttgctttatctttcgatatgtttcttctttg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23667069 |
attttcgtaccatatattatagcttctgcaaaattagcccacactgctgtgttatttacttgcttctttttgctttatctttcgatatgtttcttctttg |
23666970 |
T |
|
| Q |
108 |
agacccacacacaccgacatttttggaatctgaggtaactatttactgcctacgtagtacaaagacacggagaggagagatagcttttgtctgtgttgct |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23666969 |
agacccacacacaccgacatttttggaatctgaggtaactatttactgcctacgtagtacaaagacacggagaggagagatagcttttgtctgtgttgct |
23666870 |
T |
|
| Q |
208 |
ttattcgttcttgaaaggttacattggtcctttcaaaagttgtttatcataattcaatcataccccttatcttcggatgaggatttcctaccgtaaatat |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
23666869 |
ttattcgttcttgaaaggttacattggtcctttcaaaagttgtttatcataattcaatcataccccttatcttcggatgaggatttcctgctgtaaatat |
23666770 |
T |
|
| Q |
308 |
tacatgcagttacccactgtagctgttttgcaccgtctgatttgaagtgaacagtcaagatctgacattgtgtgaaattgttgaaatctgtgatgtaaat |
407 |
Q |
| |
|
|||| |||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| || ||| |
|
|
| T |
23666769 |
tacaggcagttgtccactgtagttgttttgcaccgtctgatttgaagtgaacggtcaagatctgacattgtgtgaaattgttgaaatccgtgttgcgaat |
23666670 |
T |
|
| Q |
408 |
tggaaccgtcggatcatggattgatgactgagattttctcatgcggcaaactgtgtgaatttgctacagcagcaaatccagatagaaacattgaaacatg |
507 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23666669 |
tggaaccgtcggattatggattgatgactgagattttctcctacggcaaactgtgtgaatttgctacagcagcaaatccagatagaaacattgaaacatg |
23666570 |
T |
|
| Q |
508 |
atgatggctgctttagtgtgcaaccgatatggattatcaaactgaattgaagtactacgtattggtcgtaacacttaaaccctaattcatcgtagaaata |
607 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23666569 |
atgatagctgctttagtgtgcaaccgatatggattatcaaactgaatcgaagtactatgtattggtcgtaacacttaaaccctaattcatcgtagaaata |
23666470 |
T |
|
| Q |
608 |
aacaaaattataaccgctcaataatcacagacgtatacatcattaaccgaactacaagaccggagaacatattccgttgtctttcaattttagtttctca |
707 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
23666469 |
aacaaaattataaccgctcaataatcacagacgtatacaccattaaccgaactacaagaccaaagaacatattttgttgtctttcaattttagtttctca |
23666370 |
T |
|
| Q |
708 |
tatacttttatgctggttgcttctctaacctctcaatctggataggaccaaggtgaacaacaaaact---cttcaaaaaatttatcgcattttcaaaact |
804 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||| |||||||||||||||| |
|
|
| T |
23666369 |
tatacttttatgctggttgcttctctaacctctcaatctggataggaccaaggtgaacgacaaaactcttcttcaaaagttttgtcgcattttcaaaact |
23666270 |
T |
|
| Q |
805 |
tgatttaaactcaacatc---ttaaaccagaaagacctgaataatctcatctaataacaaaagagacctaaatattctcatctaaagtatgtatgtccat |
901 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23666269 |
tgatttaaactcaacatctttttaaaccagaaagacctgaataatctcatc---taacaaaagagacctaaatattctcatctaaagtatgtatgtccat |
23666173 |
T |
|
| Q |
902 |
tgttccacagattatgacttgcacttggaatttggatgataaagtttgtgataattagtgtatggcgtgtgttttgcacaatctaattcaaatggaaca |
1000 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23666172 |
tgttccacagattatgacttgcacttggaatttggatgataaagtttgtgataattagtgtatggcgtgtgttttgcacaatctaattcaaatggaaca |
23666074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 325 - 486
Target Start/End: Original strand, 12240600 - 12240761
Alignment:
| Q |
325 |
tgtagctgttttgcaccgtctgatttgaagtgaacagtcaagatctgacattgtgtgaaattgttgaaatctgtgatgtaaattggaaccgtcggatcat |
424 |
Q |
| |
|
|||||||||| | ||||||||||| |||||||||| | ||||||||||||||||||||||||||||||| | || ||| ||||||||||||| |||||| |
|
|
| T |
12240600 |
tgtagctgttctacaccgtctgatctgaagtgaacgattaagatctgacattgtgtgaaattgttgaaatttatgctgtgaattggaaccgtcagatcat |
12240699 |
T |
|
| Q |
425 |
ggattgatgactgagattttctcatgcggcaaactgtgtgaatttgctacagcagcaaatcc |
486 |
Q |
| |
|
||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12240700 |
ggattgatggctgagatttgctactgcggcaaactgtgtgaatttgctacagcagcaaatcc |
12240761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 325 - 486
Target Start/End: Original strand, 49620617 - 49620778
Alignment:
| Q |
325 |
tgtagctgttttgcaccgtctgatttgaagtgaacagtcaagatctgacattgtgtgaaattgttgaaatctgtgatgtaaattggaaccgtcggatcat |
424 |
Q |
| |
|
||||| |||| | ||||||||||| ||||||||| || ||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||| |
|
|
| T |
49620617 |
tgtagttgttctacaccgtctgatctgaagtgaaacgttaagatctgacattgtgtgaaattgttgaaatttgtgctgtaaattggaaccgtcagatcat |
49620716 |
T |
|
| Q |
425 |
ggattgatgactgagattttctcatgcggcaaactgtgtgaatttgctacagcagcaaatcc |
486 |
Q |
| |
|
||||||||| ||||||||| || ||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
49620717 |
ggattgatggctgagatttgctactgcggcaaactatgtgaatttgctacagcaacaaatcc |
49620778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 384 - 487
Target Start/End: Original strand, 24851008 - 24851111
Alignment:
| Q |
384 |
attgttgaaatctgtgatgtaaattggaaccgtcggatcatggattgatgactgagattttctcatgcggcaaactgtgtgaatttgctacagcagcaaa |
483 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||| ||||||||||||||| |||||||| || ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
24851008 |
attgttgaaatctgtgttgtgaattggaaccgtcagatcatggattgatggatgagatttactactgcggaaaactgtgtgaatttgctacagcagcaaa |
24851107 |
T |
|
| Q |
484 |
tcca |
487 |
Q |
| |
|
|||| |
|
|
| T |
24851108 |
tcca |
24851111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 326 - 408
Target Start/End: Original strand, 14625565 - 14625647
Alignment:
| Q |
326 |
gtagctgttttgcaccgtctgatttgaagtgaacagtcaagatctgacattgtgtgaaattgttgaaatctgtgatgtaaatt |
408 |
Q |
| |
|
|||| |||||||||||||| ||| | |||||| |||||||||||||| || ||||||||||||||||| || |||||||| |
|
|
| T |
14625565 |
gtaggtgttttgcaccgtccgatctaaagtgattggtcaagatctgacactgcgtgaaattgttgaaatccatgttgtaaatt |
14625647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 114; Significance: 3e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 285 - 486
Target Start/End: Original strand, 45903310 - 45903511
Alignment:
| Q |
285 |
tgaggatttcctaccgtaaatattacatgcagttacccactgtagctgttttgcaccgtctgatttgaagtgaacagtcaagatctgacattgtgtgaaa |
384 |
Q |
| |
|
|||||||||||| | |||| ||||| |||||| | | ||||||||||| | ||||||||||| |||||||||| || ||||||||||||||||| ||| |
|
|
| T |
45903310 |
tgaggatttcctgctgtaatatttacacgcagttgcacgctgtagctgttctacaccgtctgatctgaagtgaacggttaagatctgacattgtgtaaaa |
45903409 |
T |
|
| Q |
385 |
ttgttgaaatctgtgatgtaaattggaaccgtcggatcatggattgatgactgagattttctcatgcggcaaactgtgtgaatttgctacagcagcaaat |
484 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||| ||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
45903410 |
ttgttgaaatctgtgctgtgaattggaaccgtcagatcatggattgatggctgagatttgctactgcggcaaactgtgtgaatttgctacagcagcaaat |
45903509 |
T |
|
| Q |
485 |
cc |
486 |
Q |
| |
|
|| |
|
|
| T |
45903510 |
cc |
45903511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 110; Significance: 7e-55; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 7e-55
Query Start/End: Original strand, 281 - 486
Target Start/End: Original strand, 26377799 - 26378004
Alignment:
| Q |
281 |
cggatgaggatttcctaccgtaaatattacatgcagttacccactgtagctgttttgcaccgtctgatttgaagtgaacagtcaagatctgacattgtgt |
380 |
Q |
| |
|
|||||||||||||||| | |||| ||||| |||||| | | ||||||||||| | ||||||||||| ||||||||| || ||||||||||||||||| |
|
|
| T |
26377799 |
cggatgaggatttcctgctgtaatatttacacgcagttgcacgctgtagctgttctacaccgtctgatctgaagtgaatggttaagatctgacattgtgt |
26377898 |
T |
|
| Q |
381 |
gaaattgttgaaatctgtgatgtaaattggaaccgtcggatcatggattgatgactgagattttctcatgcggcaaactgtgtgaatttgctacagcagc |
480 |
Q |
| |
|
|||||||||||||| |||| ||| ||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||| || | |
|
|
| T |
26377899 |
gaaattgttgaaatttgtgctgtgaattggaaccgtcagatcatggattgatgactgagatttgctactgcggcaaactgtgtgaatttgctacaacaac |
26377998 |
T |
|
| Q |
481 |
aaatcc |
486 |
Q |
| |
|
|||||| |
|
|
| T |
26377999 |
aaatcc |
26378004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 307 - 486
Target Start/End: Complemental strand, 23594704 - 23594525
Alignment:
| Q |
307 |
ttacatgcagttacccactgtagctgttttgcaccgtctgatttgaagtgaacagtcaagatctgacattgtgtgaaattgttgaaatctgtgatgtaaa |
406 |
Q |
| |
|
||||| |||||| | | ||||||||||| | ||||||||||| |||||||||| || ||||| ||||||||||||||||||||||||| |||| ||| || |
|
|
| T |
23594704 |
ttacacgcagttgcacgctgtagctgttctacaccgtctgatctgaagtgaacggttaagatatgacattgtgtgaaattgttgaaatttgtgctgtgaa |
23594605 |
T |
|
| Q |
407 |
ttggaaccgtcggatcatggattgatgactgagattttctcatgcggcaaactgtgtgaatttgctacagcagcaaatcc |
486 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23594604 |
ttggaaccgtcagatcatggattgatggctgagatttgctactgcggcaaactgtgtgaatttgctacagcagcaaatcc |
23594525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 327 - 486
Target Start/End: Complemental strand, 14277376 - 14277217
Alignment:
| Q |
327 |
tagctgttttgcaccgtctgatttgaagtgaacagtcaagatctgacattgtgtgaaattgttgaaatctgtgatgtaaattggaaccgtcggatcatgg |
426 |
Q |
| |
|
|||||||| | ||||||||||| |||||||||| || ||||||||||||||||| ||||||||||||| ||| ||| |||||||| |||| ||||||| |
|
|
| T |
14277376 |
tagctgttctacaccgtctgatctgaagtgaacggttaagatctgacattgtgttaaattgttgaaattcgtgctgtgaattggaatcgtcagatcatga |
14277277 |
T |
|
| Q |
427 |
attgatgactgagattttctcatgcggcaaactgtgtgaatttgctacagcagcaaatcc |
486 |
Q |
| |
|
||||| | ||||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14277276 |
attgacggctgagatttgctactgcggcaaactgtgtgaatttgctacagcagcaaatcc |
14277217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 110; Significance: 7e-55; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 7e-55
Query Start/End: Original strand, 285 - 486
Target Start/End: Complemental strand, 19596175 - 19595974
Alignment:
| Q |
285 |
tgaggatttcctaccgtaaatattacatgcagttacccactgtagctgttttgcaccgtctgatttgaagtgaacagtcaagatctgacattgtgtgaaa |
384 |
Q |
| |
|
|||||||||||| | |||| ||||| |||||||| | ||||||||||| | ||||||||||| |||||||||| || ||||||||| ||||||| ||| |
|
|
| T |
19596175 |
tgaggatttcctgctgtaatatttacacgcagttacacgctgtagctgttctacaccgtctgatctgaagtgaacggttaagatctgatattgtgtaaaa |
19596076 |
T |
|
| Q |
385 |
ttgttgaaatctgtgatgtaaattggaaccgtcggatcatggattgatgactgagattttctcatgcggcaaactgtgtgaatttgctacagcagcaaat |
484 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||| ||||||||||||||| ||||||||| || ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
19596075 |
ttgttgaaatctgtgctgtgaattggaaccgtcagatcatggattgatggctgagatttgctactgcggcaaactgtgtgaatttgctacaacagcaaat |
19595976 |
T |
|
| Q |
485 |
cc |
486 |
Q |
| |
|
|| |
|
|
| T |
19595975 |
cc |
19595974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 307 - 486
Target Start/End: Complemental strand, 32495909 - 32495730
Alignment:
| Q |
307 |
ttacatgcagttacccactgtagctgttttgcaccgtctgatttgaagtgaacagtcaagatctgacattgtgtgaaattgttgaaatctgtgatgtaaa |
406 |
Q |
| |
|
||||| |||||| | | ||||||||||| | ||||||||||| |||||||||| || ||||||||||||||||||||||| ||||||| |||| ||| || |
|
|
| T |
32495909 |
ttacacgcagttgcacgctgtagctgttctacaccgtctgatctgaagtgaacggttaagatctgacattgtgtgaaattattgaaatttgtgttgtgaa |
32495810 |
T |
|
| Q |
407 |
ttggaaccgtcggatcatggattgatgactgagattttctcatgcggcaaactgtgtgaatttgctacagcagcaaatcc |
486 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32495809 |
ttggaaccgtcagatcatggattgatggctgagatttgctactgcggcaaactgtgtgaatttgctacagcagcaaatcc |
32495730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 307 - 486
Target Start/End: Original strand, 46336327 - 46336506
Alignment:
| Q |
307 |
ttacatgcagttacccactgtagctgttttgcaccgtctgatttgaagtgaacagtcaagatctgacattgtgtgaaattgttgaaatctgtgatgtaaa |
406 |
Q |
| |
|
||||| |||||| | | |||||| |||| | ||||||||||| |||||||||| || ||||||||||||||||||||||| ||||||| |||| ||| || |
|
|
| T |
46336327 |
ttacacgcagttgcacgctgtagttgttctacaccgtctgatctgaagtgaacggttaagatctgacattgtgtgaaattattgaaatttgtgctgtgaa |
46336426 |
T |
|
| Q |
407 |
ttggaaccgtcggatcatggattgatgactgagattttctcatgcggcaaactgtgtgaatttgctacagcagcaaatcc |
486 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46336427 |
ttggaaccgtcaaatcatggattgatggctgagatttgctactgcggcaaactgtgtgaatttgctacagcagcaaatcc |
46336506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 283 - 490
Target Start/End: Complemental strand, 43997360 - 43997153
Alignment:
| Q |
283 |
gatgaggatttcctaccgtaaatattacatgcagttacccactgtagctgttttgcaccgtctgatttgaagtgaacagtcaagatctgacattgtgtga |
382 |
Q |
| |
|
||||||||||| || | |||||||||||| |||||| |||||| |||||||||||||||||| |||| ||||| || | ||||||| ||||||||| |
|
|
| T |
43997360 |
gatgaggattttctgctgtaaatattacacgcagttgtaggctgtagttgttttgcaccgtctgatctgaaatgaacggttatgatctgatattgtgtga |
43997261 |
T |
|
| Q |
383 |
aattgttgaaatctgtgatgtaaattggaaccgtcggatcatggattgatgactgagattttctcatgcggcaaactgtgtgaatttgctacagcagcaa |
482 |
Q |
| |
|
|||||||||||| |||| ||| ||||| ||||||| ||||||| ||||||| ||||||||| | |||| |||||||||||||||||||||||||||| |
|
|
| T |
43997260 |
aattgttgaaatatgtgctgtgaattgaaaccgtcagatcatgaattgatggctgagatttgcaactgcgataaactgtgtgaatttgctacagcagcaa |
43997161 |
T |
|
| Q |
483 |
atccagat |
490 |
Q |
| |
|
|||||||| |
|
|
| T |
43997160 |
atccagat |
43997153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 281 - 443
Target Start/End: Original strand, 43632837 - 43632999
Alignment:
| Q |
281 |
cggatgaggatttcctaccgtaaatattacatgcagttacccactgtagctgttttgcaccgtctgatttgaagtgaacagtcaagatctgacattgtgt |
380 |
Q |
| |
|
||||||||||||| || | |||||||||||| |||||| | | |||||| |||| |||||| |||||||| || ||||| || ||||||||||||||||| |
|
|
| T |
43632837 |
cggatgaggattttctgctgtaaatattacacgcagttgcacgctgtagttgttctgcaccatctgatttaaaatgaacggttaagatctgacattgtgt |
43632936 |
T |
|
| Q |
381 |
gaaattgttgaaatctgtgatgtaaattggaaccgtcggatcatggattgatgactgagattt |
443 |
Q |
| |
|
|||||||||||| | ||| ||| ||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
43632937 |
gaaattgttgaatttcgtgctgtgaattggaaccgtcagatcatggattgatggttgagattt |
43632999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 362 - 490
Target Start/End: Original strand, 11692531 - 11692660
Alignment:
| Q |
362 |
tcaagatctgacattgtgtgaaattgttgaaatctgtgatgtaaattggaaccg-tcggatcatggattgatgactgagattttctcatgcggcaaactg |
460 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||| || ||| |||| ||| || || | | ||||||||||| |||||||||||| | | |||||||| |
|
|
| T |
11692531 |
tcaaaatctgatattgtgtgaaattgttgaaatcggtattgtgaatttgaaacgatcaggttatggattgatggctgagattttctactacagcaaactg |
11692630 |
T |
|
| Q |
461 |
tgtgaatttgctacagcagcaaatccagat |
490 |
Q |
| |
|
|||||||||||||| ||||| |||||||| |
|
|
| T |
11692631 |
cgtgaatttgctacaccagcatatccagat |
11692660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 449 - 490
Target Start/End: Original strand, 19887033 - 19887074
Alignment:
| Q |
449 |
tgcggcaaactgtgtgaatttgctacagcagcaaatccagat |
490 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
19887033 |
tgcggcaaactgtgtgaatttgctacaacagtaaatccagat |
19887074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 102; Significance: 4e-50; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 325 - 490
Target Start/End: Original strand, 41985279 - 41985444
Alignment:
| Q |
325 |
tgtagctgttttgcaccgtctgatttgaagtgaacagtcaagatctgacattgtgtgaaattgttgaaatctgtgatgtaaattggaaccgtcggatcat |
424 |
Q |
| |
|
|||||||||| |||||||| |||| |||||||| | |||||||||||||||||| |||||||||||||||| ||| ||| |||||||||||||||||||| |
|
|
| T |
41985279 |
tgtagctgttctgcaccgtttgatctgaagtgagcggtcaagatctgacattgtatgaaattgttgaaatccgtgttgtgaattggaaccgtcggatcat |
41985378 |
T |
|
| Q |
425 |
ggattgatgactgagattttctcatgcggcaaactgtgtgaatttgctacagcagcaaatccagat |
490 |
Q |
| |
|
||||||||| ||||||||| || |||| |||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
41985379 |
ggattgatggctgagatttgctactgcgacaaattgtgtgaatttgctacggcagcaaatccagat |
41985444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 307 - 468
Target Start/End: Complemental strand, 14792522 - 14792361
Alignment:
| Q |
307 |
ttacatgcagttacccactgtagctgttttgcaccgtctgatttgaagtgaacagtcaagatctgacattgtgtgaaattgttgaaatctgtgatgtaaa |
406 |
Q |
| |
|
||||| |||||| | | ||||||||||| | ||||||||||| |||||||||| || ||||||||||||||||||||||||||||||| |||| ||| || |
|
|
| T |
14792522 |
ttacacgcagttgcacgctgtagctgttctacaccgtctgatctgaagtgaacggttaagatctgacattgtgtgaaattgttgaaatttgtgttgtgaa |
14792423 |
T |
|
| Q |
407 |
ttggaaccgtcggatcatggattgatgactgagattttctcatgcggcaaactgtgtgaatt |
468 |
Q |
| |
|
||||||||||| |||||| |||||||| ||||||||| || |||||||||||||||||||| |
|
|
| T |
14792422 |
ttggaaccgtcagatcatagattgatggctgagatttgctactgcggcaaactgtgtgaatt |
14792361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 324 - 486
Target Start/End: Complemental strand, 4926269 - 4926107
Alignment:
| Q |
324 |
ctgtagctgttttgcaccgtctgatttgaagtgaacagtcaagatctgacattgtgtgaaattgttgaaatctgtgatgtaaattggaaccgtcggatca |
423 |
Q |
| |
|
||||||||||| | ||||||||||| |||||||||| || ||||||||||||||||||||||||||||||| |||| | |||| ||||||| ||||| |
|
|
| T |
4926269 |
ctgtagctgttgtacaccgtctgatctgaagtgaacggttaagatctgacattgtgtgaaattgttgaaatttgtgctacgaattagaaccgttagatca |
4926170 |
T |
|
| Q |
424 |
tggattgatgactgagattttctcatgcggcaaactgtgtgaatttgctacagcagcaaatcc |
486 |
Q |
| |
|
|||||||||| ||||||||| || || |||||||||||||||||||||||||||||||||| |
|
|
| T |
4926169 |
tggattgatggctgagatttgctacagcagcaaactgtgtgaatttgctacagcagcaaatcc |
4926107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 326 - 487
Target Start/End: Complemental strand, 7260418 - 7260257
Alignment:
| Q |
326 |
gtagctgttttgcaccgtctgatttgaagtgaacagtcaagatctgacattgtgtgaaattgttgaaatctgtgatgtaaattggaaccgtcggatcatg |
425 |
Q |
| |
|
||||||||||| |||||||||| | || |||| || ||||||||||||||| |||||||||| |||||| || ||||||||| ||| ||| |||||| |
|
|
| T |
7260418 |
gtagctgttttaaaccgtctgatctaaaatgaatggttaagatctgacattgtatgaaattgttaaaatctttgctgtaaattgaaacagtcagatcata |
7260319 |
T |
|
| Q |
426 |
gattgatgactgagattttctcatgcggcaaactgtgtgaatttgctacagcagcaaatcca |
487 |
Q |
| |
|
|||||||| ||||||||| || ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7260318 |
gattgatggctgagatttactactgcggcaaactgtgtgaatttgctatagcagcaaatcca |
7260257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 324 - 475
Target Start/End: Original strand, 19680972 - 19681123
Alignment:
| Q |
324 |
ctgtagctgttttgcaccgtctgatttgaagtgaacagtcaagatctgacattgtgtgaaattgttgaaatctgtgatgtaaattggaaccgtcggatca |
423 |
Q |
| |
|
||||||||||| | ||||||||||| |||| |||| || ||||| ||| |||||||||||||||| |||| | || ||| ||||||||||||| ||||| |
|
|
| T |
19680972 |
ctgtagctgttctacaccgtctgatctgaaatgaatggttaagatttgatattgtgtgaaattgttaaaatttatgttgtgaattggaaccgtcagatca |
19681071 |
T |
|
| Q |
424 |
tggattgatgactgagattttctcatgcggcaaactgtgtgaatttgctaca |
475 |
Q |
| |
|
|||||||||| ||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
19681072 |
tggattgatggctgagatttgctactgcggcaaactgtgtgaatttgctaca |
19681123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 385 - 490
Target Start/End: Original strand, 1264952 - 1265058
Alignment:
| Q |
385 |
ttgttgaaatctgtgatgtaaattggaa-ccgtcggatcatggattgatgactgagattttctcatgcggcaaactgtgtgaatttgctacagcagcaaa |
483 |
Q |
| |
|
||||| ||||||||| ||| |||| ||| || || ||||||| ||||||| ||||||||| || | ||||||||| ||||||||||||||||||||| |
|
|
| T |
1264952 |
ttgttaaaatctgtgctgtgaatttgaaaccatcagatcatgaattgatggctgagatttactattatagcaaactgtttgaatttgctacagcagcaaa |
1265051 |
T |
|
| Q |
484 |
tccagat |
490 |
Q |
| |
|
||||||| |
|
|
| T |
1265052 |
tccagat |
1265058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 336 - 385
Target Start/End: Original strand, 1262040 - 1262089
Alignment:
| Q |
336 |
tgcaccgtctgatttgaagtgaacagtcaagatctgacattgtgtgaaat |
385 |
Q |
| |
|
||||||||| ||| | |||||||| |||||||||| |||||||||||||| |
|
|
| T |
1262040 |
tgcaccgtccgatctaaagtgaacggtcaagatctaacattgtgtgaaat |
1262089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 2e-49; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 326 - 486
Target Start/End: Complemental strand, 39305624 - 39305464
Alignment:
| Q |
326 |
gtagctgttttgcaccgtctgatttgaagtgaacagtcaagatctgacattgtgtgaaattgttgaaatctgtgatgtaaattggaaccgtcggatcatg |
425 |
Q |
| |
|
||||||||| | |||||||||| |||||||||| || ||||| ||||||||| ||||||||||||||| |||| ||||||||||||||||| ||||||| |
|
|
| T |
39305624 |
gtagctgttctataccgtctgatctgaagtgaacggttaagatttgacattgtatgaaattgttgaaatttgtgctgtaaattggaaccgtcagatcatg |
39305525 |
T |
|
| Q |
426 |
gattgatgactgagattttctcatgcggcaaactgtgtgaatttgctacagcagcaaatcc |
486 |
Q |
| |
|
|||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39305524 |
gattgatggctgagatttgctactgcggcaaactgtgtgaatttgctacagcagcaaatcc |
39305464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 324 - 468
Target Start/End: Original strand, 17539996 - 17540140
Alignment:
| Q |
324 |
ctgtagctgttttgcaccgtctgatttgaagtgaacagtcaagatctgacattgtgtgaaattgttgaaatctgtgatgtaaattggaaccgtcggatca |
423 |
Q |
| |
|
||||||||||| | ||||||||||| |||||||||| || ||||| ||||||||||||||||||||||||| |||| ||| ||||||||||||| ||||| |
|
|
| T |
17539996 |
ctgtagctgttctacaccgtctgatctgaagtgaacggttaagatttgacattgtgtgaaattgttgaaatttgtgctgtgaattggaaccgtcagatca |
17540095 |
T |
|
| Q |
424 |
tggattgatgactgagattttctcatgcggcaaactgtgtgaatt |
468 |
Q |
| |
|
| |||||||| ||||||||| || |||||||||||||||||||| |
|
|
| T |
17540096 |
tagattgatggctgagatttgctactgcggcaaactgtgtgaatt |
17540140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 327 - 475
Target Start/End: Complemental strand, 9625596 - 9625448
Alignment:
| Q |
327 |
tagctgttttgcaccgtctgatttgaagtgaacagtcaagatctgacattgtgtgaaattgttgaaatctgtgatgtaaattggaaccgtcggatcatgg |
426 |
Q |
| |
|
|||||||| | |||||||| || |||||||||| || |||||||||||||| ||||||||||||||||||||| | | ||||||||||||| |||||||| |
|
|
| T |
9625596 |
tagctgttctacaccgtctaatctgaagtgaacggttaagatctgacattgcgtgaaattgttgaaatctgtgttatgaattggaaccgtcagatcatgg |
9625497 |
T |
|
| Q |
427 |
attgatgactgagattttctcatgcggcaaactgtgtgaatttgctaca |
475 |
Q |
| |
|
|||||| |||| |||| || |||| |||||||||||||||||||||| |
|
|
| T |
9625496 |
attgatagctgatatttgctactgcgacaaactgtgtgaatttgctaca |
9625448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 99; Significance: 2e-48; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 281 - 490
Target Start/End: Complemental strand, 13083802 - 13083592
Alignment:
| Q |
281 |
cggatgaggatttcctaccgtaaa-tattacatgcagttacccactgtagctgttttgcaccgtctgatttgaagtgaacagtcaagatctgacattgtg |
379 |
Q |
| |
|
||||||||||||| || | ||||| ||||||| |||||| | ||||||||||||| ||||||| ||||| |||| ||||||| ||||||||||||||| |
|
|
| T |
13083802 |
cggatgaggattttctgctgtaaaatattacacgcagttgcacactgtagctgttctgcaccgcctgatctgaactgaacagctcagatctgacattgtg |
13083703 |
T |
|
| Q |
380 |
tgaaattgttgaaatctgtgatgtaaattggaaccgtcggatcatggattgatgactgagattttctcatgcggcaaactgtgtgaatttgctacagcag |
479 |
Q |
| |
|
|||||||||||||||| ||| ||| |||||||||| || |||||||||||||| ||||||||| || ||||||||||||||| ||||||||||| ||| |
|
|
| T |
13083702 |
tgaaattgttgaaatccgtgctgtgaattggaaccatcagatcatggattgatcgctgagatttgctactgcggcaaactgtgtaaatttgctacaacag |
13083603 |
T |
|
| Q |
480 |
caaatccagat |
490 |
Q |
| |
|
|||||||||| |
|
|
| T |
13083602 |
taaatccagat |
13083592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 326 - 433
Target Start/End: Complemental strand, 32612479 - 32612371
Alignment:
| Q |
326 |
gtagctgttttgcaccgtctgatttgaagtgaacagtcaagatctgacattgtgtgaaattgttgaaatctgtgatgt-aaattggaaccgtcggatcat |
424 |
Q |
| |
|
|||| ||||||||||| | ||| |||||||||| |||||||||| | ||| ||| ||||| ||||||| ||||||| || |||| ||||||||||||| |
|
|
| T |
32612479 |
gtagttgttttgcaccattcgatctgaagtgaacggtcaagatctaatattatgtaaaattattgaaattcgtgatgtgaatttgggaccgtcggatcat |
32612380 |
T |
|
| Q |
425 |
ggattgatg |
433 |
Q |
| |
|
||||||||| |
|
|
| T |
32612379 |
ggattgatg |
32612371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1603 (Bit Score: 95; Significance: 6e-46; HSPs: 1)
Name: scaffold1603
Description:
Target: scaffold1603; HSP #1
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 324 - 490
Target Start/End: Original strand, 914 - 1080
Alignment:
| Q |
324 |
ctgtagctgttttgcaccgtctgatttgaagtgaacagtcaagatctgacattgtgtgaaattgttgaaatctgtgatgtaaattggaaccgtcggatca |
423 |
Q |
| |
|
||||| ||||| || |||||||||| |||||||||| |||||||||||||||||||| |||||||||||||| ||| ||| ||||||||||||| ||||| |
|
|
| T |
914 |
ctgtaactgttctgtaccgtctgatctgaagtgaacggtcaagatctgacattgtgtaaaattgttgaaatccgtgctgtgaattggaaccgtcagatca |
1013 |
T |
|
| Q |
424 |
tggattgatgactgagattttctcatgcggcaaactgtgtgaatttgctacagcagcaaatccagat |
490 |
Q |
| |
|
|| ||||||| |||||||| || |||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1014 |
tgaattgatggttgagatttgctactgcgacaaactgtgtgaatttgctacagcagcaaattcagat |
1080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 2e-45; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 285 - 486
Target Start/End: Original strand, 38992702 - 38992903
Alignment:
| Q |
285 |
tgaggatttcctaccgtaaatattacatgcagttacccactgtagctgttttgcaccgtctgatttgaagtgaacagtcaagatctgacattgtgtgaaa |
384 |
Q |
| |
|
|||||||||||| | |||| ||||| |||||| | | |||||| |||| | ||||||||||| |||||||||| || ||||||||||||||||||||| |
|
|
| T |
38992702 |
tgaggatttcctgctgtaatatttacacgcagttgcacgctgtagttgttctacaccgtctgatctgaagtgaacggttaagatctgacattgtgtgaaa |
38992801 |
T |
|
| Q |
385 |
ttgttgaaatctgtgatgtaaattggaaccgtcggatcatggattgatgactgagattttctcatgcggcaaactgtgtgaatttgctacagcagcaaat |
484 |
Q |
| |
|
|| |||||||||||| | | ||||| |||| || |||||| |||||||| ||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
38992802 |
ttattgaaatctgtgctttgaattgcaaccttcagatcatagattgatggctgagatttgctactgcggcaaactgtgtgaatttgctacagcagcaaat |
38992901 |
T |
|
| Q |
485 |
cc |
486 |
Q |
| |
|
|| |
|
|
| T |
38992902 |
cc |
38992903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 435 - 487
Target Start/End: Original strand, 26692004 - 26692056
Alignment:
| Q |
435 |
ctgagattttctcatgcggcaaactgtgtgaatttgctacagcagcaaatcca |
487 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26692004 |
ctgagatttgctactgcggcaaactgtgtgaatttgctacagcagcaaatcca |
26692056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 326 - 490
Target Start/End: Original strand, 21890 - 22051
Alignment:
| Q |
326 |
gtagctgttttgcaccgtctgatttgaagtgaacagtcaagatctgacattgtgtgaaattgttg---aaatctgtgatgtaaattggaaccgtcggatc |
422 |
Q |
| |
|
||||||||| ||||| ||||||| |||| ||||| || ||||||| | ||||||| ||||| ||| |||||||| ||| ||||||||||||| |||| |
|
|
| T |
21890 |
gtagctgttatgcac-gtctgatctgaattgaacggttaagatctaatattgtgtaaaattattgttaaaatctgtattgtgaattggaaccgtcagatc |
21988 |
T |
|
| Q |
423 |
atggattgatgactgagattttctcatgcggcaaactgtgtgaatttgctacagcagcaaatccagat |
490 |
Q |
| |
|
||||||||||| ||||| || ||| ||||||||||||||||| |||| || ||||||||||| |
|
|
| T |
21989 |
atggattgatg-----gatttgctactgcaacaaactgtgtgaatttgttacaacaacaaatccagat |
22051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 326 - 408
Target Start/End: Complemental strand, 191818 - 191736
Alignment:
| Q |
326 |
gtagctgttttgcaccgtctgatttgaagtgaacagtcaagatctgacattgtgtgaaattgttgaaatctgtgatgtaaatt |
408 |
Q |
| |
|
|||| |||||||||||||| ||| | |||||| |||||||||||||| || ||||||||||||||||| || |||||||| |
|
|
| T |
191818 |
gtaggtgttttgcaccgtccgatctaaagtgattggtcaagatctgacactgcgtgaaattgttgaaatccatgttgtaaatt |
191736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University