View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5098-Insertion-6 (Length: 431)

Name: NF5098-Insertion-6
Description: NF5098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5098-Insertion-6
NF5098-Insertion-6
[»] chr1 (1 HSPs)
chr1 (8-431)||(11978944-11979372)


Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 8 - 431
Target Start/End: Complemental strand, 11979372 - 11978944
Alignment:
Q  8 gtatcaacatcctttctttgcactaaaaactagtgaacataaaggaaataatcaaaactgaattaatttaagggtcttgttaacgagtgcgcccgaggtt 107  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11979372 gtatcaacatcctttctttgcactaaaaactagtgaacagaaaggaaataatcaaaactgaattaatttaagggtcttgttaacgagtgc-cccgaggtt 11979274  T
Q  108 gtttgcaatcacaacccaaaagctcgacttttgagatttgaagaatattaaaatctggcataagaactcgaccgtccaatcttgattgaatagccgagat 207  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| | ||||||||||||||||||| |||||||||    
T  11979273 gtttgcaatcacaacccaaaagctcgacttttgagatttgaagactattaaaatctggtataagaactagtccgtccaatcttgattgaacagccgagat 11979174  T
Q  208 acgggtgactacatctaatcctattcctattcttaaaggtgtctctctcaattaaaacttagaacatc-----aattatagcaatacatcattctggacg 302  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||     |||||||||||||||||||||||||||    
T  11979173 acgggtgactacatctaatcctattcctattcttaaaggcgtctctctcaattaaaacttagaacatcaatataattatagcaatacatcattctggacg 11979074  T
Q  303 attcatccatccttgtttattttaatctatttaattattggttcctttgatatcttattgtttgtttatacaaatagaatgcaagttacacgggaacgta 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11979073 attcatccatccttgtttattttaatctatttaattattggttcctttgatatcttattgtttgtttatacaaatagaatgcaagttacacgggaacgta 11978974  T
Q  403 cttataacaattgaaaa-aacgcaaacata 431  Q
    ||||||||||||||||| ||||||||||||    
T  11978973 cttataacaattgaaaagaacgcaaacata 11978944  T

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