View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5098_high_13 (Length: 309)
Name: NF5098_high_13
Description: NF5098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5098_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 42468297 - 42468007
Alignment:
| Q |
1 |
taataaaagtgtgactctttgttgttttccacatatctagtaattgttggcttctgttgttaattacgtaagctagctacatattgatccgcatcacgca |
100 |
Q |
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||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| | |||||||||| |
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| T |
42468297 |
taataaaagtgtgactccttgttgttttccacata-------attgttggcttctgttgttaattatgtaagctagctacatattgacctgcatcacgca |
42468205 |
T |
|
| Q |
101 |
ggatgaaaataatataagcttcgttatgtatttcatccctacaaatatattgttactagtcaatatgtcttttccattaataatgagtgtatacttattg |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
42468204 |
ggatgaaaataatataagcttcattatgtatttcatccctacaaatatattg-tactagtcaatatgtcttttccattaataatgagtgtatgcttattg |
42468106 |
T |
|
| Q |
201 |
agctattacttgctcagatgtgtcgaagttttctggtcnnnnnnnnctcttggataaaagattcaacatttactgatagaaaactcgctataagaataa |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42468105 |
agctattacttgctcagatgtgtcgaagttttctggtcttttttctctcttggataaaagattcaacatttactgatagaaaactcgctataagaataa |
42468007 |
T |
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