View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5098_high_2 (Length: 405)
Name: NF5098_high_2
Description: NF5098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5098_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 21 - 372
Target Start/End: Complemental strand, 331089 - 330753
Alignment:
| Q |
21 |
catcatcaccaccaatgagtcaatacaatcagcaacaaccaccggtcggggttccaccgcctcaaggtacatacgtaatcattattgattgctttgtct- |
119 |
Q |
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| T |
331089 |
catcatcgccaccaatgagtcaatacaatcagcaacaaccaccggtcggggttccaccgcctcaaggtacatacgtaatcattattgattgctttgtcta |
330990 |
T |
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| Q |
120 |
------gctttattcattttacatttctcaatcaatctcatgatttatttattatgaataggttatccaccatctgatgcaaaggaaggacatcctccac |
213 |
Q |
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| T |
330989 |
atgtccgcattattcattttacatttctcaatc----tcatgatttatttat---gaataggttatccaccatctgatgcaaaggaaggacatcctccac |
330897 |
T |
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| Q |
214 |
aaggatatccacctcaagggtatccaccgcaaggttatccaccgcaagggtatccaccacaaggatatccgccaccgggatatccaccaccaggttatcc |
313 |
Q |
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|||| |||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
330896 |
aagggtatccaccacaagggtatccaccgcaagggtatccaccgcaagg---------------atatccgccaccgggatatccaccaccaggttatcc |
330812 |
T |
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| Q |
314 |
accgcaacaaggatatcctccaccaccctacccagcacaagggtatcctccacaatatg |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
330811 |
accgcaacaaggatatcctccaccaccctacccagcacaagggtatcctccacaatatg |
330753 |
T |
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