View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5098_high_5 (Length: 354)
Name: NF5098_high_5
Description: NF5098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5098_high_5 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 5 - 354
Target Start/End: Original strand, 23238305 - 23238651
Alignment:
| Q |
5 |
cagcaccacagactatcatttttcatgcatgacattctaggtggctccaatccaacagcaagagcagtgaccggagtcgttacaaatccggccctcaatg |
104 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23238305 |
cagcaccacacactatcatttttcatgcatgacattctaggtggctccaatccaacagcaagagcagtgaccggagtcgttacaaatccggccctcaatg |
23238404 |
T |
|
| Q |
105 |
cacaagttgcatttgcaaagccaaacggcgcaaaccttccactaaacaacggcattccacagaacaacaacaataatggaattctaaacaacaacaacct |
204 |
Q |
| |
|
| ||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||| ||||| || ||||| ||||||||||||||||| |
|
|
| T |
23238405 |
ctcaagttgcatttgcaaagccaaatggcgcaaaccttcctctaaacaacggtgttccacagaacaataacaacaacggaatcctaaacaacaacaacct |
23238504 |
T |
|
| Q |
205 |
ccctttcctaacaggactcagtggaaacacagggaatgtgttcaataataacaataataatgggaacaacaatttcccagtgacgaatatgaatcagata |
304 |
Q |
| |
|
||||||||||||||||||||||| |||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23238505 |
tcctttcctaacaggactcagtgggaacacaggaaacgtgttc---aataacaataataatgggaacaacaatttcccagtgacgaatatgaatcagata |
23238601 |
T |
|
| Q |
305 |
ccgcagggaacgacggtgcaggagctgatgtttggtacaatgacagtgtt |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23238602 |
ccgcagggaacgacggtgcaggagctgatgtttggtacaatgacagtgtt |
23238651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 5 - 354
Target Start/End: Complemental strand, 23214813 - 23214470
Alignment:
| Q |
5 |
cagcaccacagactatcatttttcatgcatgacattctaggtggctccaatccaacagcaagagcagtgaccggagtcgttacaaatccggccctcaatg |
104 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23214813 |
cagcaccacacactatcgtttttcatgcatgacattctaggtggctccaatccaacagcaagagcagtgaccggagtcgttacaaatccggccctcaatg |
23214714 |
T |
|
| Q |
105 |
cacaagttgcatttgcaaagccaaacggcgcaaaccttccactaaacaacggcattccacagaacaacaacaataatggaattctaaacaacaacaacct |
204 |
Q |
| |
|
| ||||||||||||||||||||||| || ||||||||||| ||||||||||| ||||||||||||| ||||| || ||||| ||||||||||||||||| |
|
|
| T |
23214713 |
ctcaagttgcatttgcaaagccaaatggtgcaaaccttcctctaaacaacggtgttccacagaacaataacaacaacggaatcctaaacaacaacaacct |
23214614 |
T |
|
| Q |
205 |
ccctttcctaacaggactcagtggaaacacagggaatgtgttcaataataacaataataatgggaacaacaatttcccagtgacgaatatgaatcagata |
304 |
Q |
| |
|
||||||||||||||||||||||| |||||||| || ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
23214613 |
tcctttcctaacaggactcagtgggaacacaggaaacgtgttca---ataacaataataatggg---aacaatttcccagtgacgaatatgaatcagata |
23214520 |
T |
|
| Q |
305 |
ccgcagggaacgacggtgcaggagctgatgtttggtacaatgacagtgtt |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23214519 |
ccgcagggaacgacggtgcaggagctgatgtttggtacaatgacagtgtt |
23214470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University