View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5098_high_8 (Length: 336)
Name: NF5098_high_8
Description: NF5098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5098_high_8 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 11 - 336
Target Start/End: Original strand, 29924353 - 29924678
Alignment:
| Q |
11 |
ccacagacacattatgatcagagcatatcttttgtctttctttctacttagaaattaataatttttgcttctccattaatagcactagctttcgaggtat |
110 |
Q |
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| T |
29924353 |
ccacagacacattatgatcatagcatatcttttgtctttctttctacttagaaattaataatttttgcttctccattaatagcactagctttcgaggtat |
29924452 |
T |
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| Q |
111 |
tattttggtgtgtaaagttgcctgaactatgctttggtccattggtgagaaaattcagttatgtgttgatagggtgcttatgctttgtatattaattcaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29924453 |
tattttggtgtgtaaagttgcctgaactatgctttggtccattggtgagaaaattcagttatgtgttgatagggtgcttatgctttgtatattaattcaa |
29924552 |
T |
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| Q |
211 |
cctaagtgtgtacaggatgccgttcctatagtttaggcaaatctggtggaaactgggaaaaattggttaaatatttcaattttagaattacttatgtagc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29924553 |
cctaagtgtgtacaggatgccgttcctatagtttaggcaaatctggtggaaactgggaaaaattggttaaatatttcaattttagaattacttatgtagc |
29924652 |
T |
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| Q |
311 |
tggattaattttttctactttttcat |
336 |
Q |
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|||||||||||||||||||||||||| |
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| T |
29924653 |
tggattaattttttctactttttcat |
29924678 |
T |
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