View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5099-Insertion-1 (Length: 977)
Name: NF5099-Insertion-1
Description: NF5099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5099-Insertion-1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 558; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 8 - 669
Target Start/End: Complemental strand, 25768201 - 25767540
Alignment:
| Q |
8 |
ttttcttgtatcaagcttggaaacatttgatgctca---acctgaatggggtattcctagcgaaagaaggacaagccatatccaagcttatagcatagtg |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
25768201 |
ttttcttgtatcaagcttggaaacatttgatgctcagaaacctgaatgggatattcctagcgaaagaaggacaagccatatccaagcttatggcatagtg |
25768102 |
T |
|
| Q |
105 |
attatatactactttaggataaacttcacccactaaattacgaaatctttgtaaccaactagtgttagcaagaaatatatctatcttagaatagattcta |
204 |
Q |
| |
|
|| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25768101 |
atcatatactactttaagataaacttcacccactacattacgaaatctttgtaaccaactagtgttagcaagaaatatatctatcttagaatagattcta |
25768002 |
T |
|
| Q |
205 |
tcattgctgacttggttattgcaccatgcatgtgtaataatctcctattgttcttacctctgaaagattattcatgaggagacaatctgcaaaatcttga |
304 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
25768001 |
tcatggctgacttggttattgcaccatgcatgtgtaataatctcctattgttcttacctctgaaagattattcatgaggagacaatctgcaaaatcttaa |
25767902 |
T |
|
| Q |
305 |
atttcctgttgagtaactggattaccactcaacctatcatcaaccaacaatacaccattgaaatcaactccaattaacaagttcc--gaagttttattac |
402 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
25767901 |
atttcctgttgagtaactgaattaccactcaacctatcatcaaccaacaatacaccattgaaatcaactccaattaacaagttcccagaagttttattac |
25767802 |
T |
|
| Q |
403 |
agaagtcattaataaaattccacaacccttt-ctttgttcccggtgttaaacgcatacattaaaattattaataacataccaatctttatacatcaagcc |
501 |
Q |
| |
|
|||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25767801 |
agaagtcattaataaaattccataaccgtttcctttgttcccggtgttaaacgcatacattaaaattattaataacataccaatctttatacatcaagcc |
25767702 |
T |
|
| Q |
502 |
aaaaacctttttgaatttttcagctttaacaatagtttcaagcattacacaaatttcaatctcattagtgacat-aaaattgaataaataaaacaaaata |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
25767701 |
aaaaacctttttgaatttttcagctttaacaatagtttcaagcattacacaaatttcaatctcattagtgacataaaaattgaataaataaaacaaaata |
25767602 |
T |
|
| Q |
601 |
gtattagtatttagtgcatagaaaaaatattatgacattgaaattttatttactttcggttcacatatt |
669 |
Q |
| |
|
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25767601 |
gca-------ttagtgcatagaaaaaatattatgacattgaaattttatttactttcggttcacatatt |
25767540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 662 - 894
Target Start/End: Complemental strand, 25766758 - 25766525
Alignment:
| Q |
662 |
cacatattttgattattttagtcaacatcttgaaagatgattttgggaaagtgattattttcaaaatgacattgttgtcctccaaatcggtgaaattgag |
761 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25766758 |
cacatattttgattattttagtcaacatcttaaaagatgattttgggaa-gtgattattttcaaaatgacattgttgtcctccaaatcggtgaaattgag |
25766660 |
T |
|
| Q |
762 |
agatcaactgatgacatattagaattttatgatcttctatttgcgaaaac--nnnnnnnnaaggggaggaaacattttattttgtcatgatacgataaag |
859 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25766659 |
agatcaactgatgacatattagaattttatgaccttctatttgcgaaaactttttttttgaaggggaggaaacattttattttgtcatgatacgataaag |
25766560 |
T |
|
| Q |
860 |
tccatataaaataaagcaaaaggacgtaatgattg |
894 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
25766559 |
tccatataaaataaagcaaaaggacgtaatgattg |
25766525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 354
Target Start/End: Original strand, 33633914 - 33634105
Alignment:
| Q |
159 |
ccaactagtgttagcaagaaatatatctatcttagaatagattctatcattgctgacttggttattgcaccatgcatgtgtaataatctcctattgttct |
258 |
Q |
| |
|
||||||||| ||||||| |||| | |||||||||||||| |||||||| || ||||||||| ||||| | || |||||||||| |||||||| |
|
|
| T |
33633914 |
ccaactagtattagcaataaatctgtctatcttagaatatattctatctccactagtttggttattacaccaagtat----aataatctccgattgttct |
33634009 |
T |
|
| Q |
259 |
tacctctgaaagattattcatg-aggagacaatctgcaaaatcttgaatttcctgttgagtaactggattaccactcaacctatcatcaaccaacaa |
354 |
Q |
| |
|
|| || || || |||| ||| || |||||||| | |||||||||||| || |||||||| |||||||||||| | |||||||||||||||||| |
|
|
| T |
33634010 |
cacttccgatagtctatt-atgcagcagacaatcggaaaaatcttgaatctcatgttgagtcactggattaccattacgcctatcatcaaccaacaa |
33634105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 284 - 354
Target Start/End: Original strand, 18264771 - 18264841
Alignment:
| Q |
284 |
agacaatctgcaaaatcttgaatttcctgttgagtaactggattaccactcaacctatcatcaaccaacaa |
354 |
Q |
| |
|
|||||||| | |||||||||||| || |||||||| | |||||||||| | |||||||||||||||||| |
|
|
| T |
18264771 |
agacaatcggaaaaatcttgaatctcatgttgagtcaatggattaccattacgcctatcatcaaccaacaa |
18264841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 46 - 430
Target Start/End: Complemental strand, 40951152 - 40950770
Alignment:
| Q |
46 |
ctgaatggggtattcctagcgaaagaaggacaagccatatccaagcttatagcatagtgattatatactactttaggataaacttcacccactaaattac |
145 |
Q |
| |
|
|||||||||||||| |||| | |||||||| |||| | ||||||||||||| | |||||| | ||||| |||||||||| ||||||||||||| ||||| |
|
|
| T |
40951152 |
ctgaatggggtatttctagtggaagaaggataagcaagatccaagcttatatgacagtgatcagatactcctttaggatatacttcacccactacattac |
40951053 |
T |
|
| Q |
146 |
gaaatctttgtaaccaactagtgttagcaagaaatatatctatcttagaatagattctatcattgctgacttggttattgcaccatgcatgtgtaataat |
245 |
Q |
| |
|
|| || ||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||| | ||||||||| |
|
|
| T |
40951052 |
tgaaactatgtaaccaattagtgttagcaagaaacctatctatcttagaatagattccgtcattgcttgcttggttattgcaccaag----tgtaataat |
40950957 |
T |
|
| Q |
246 |
ctcctattgttcttacctctgaaagattattcatgaggagacaatctgcaaaatcttgaatttcctgttgagtaactggattaccactcaacctatcatc |
345 |
Q |
| |
|
| ||||| ||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
40950956 |
cacctatagttcttacctctgaaagattattagtgagcatacaatctgcaaaatcttgaatttcctgttgagtaaccagattaccattcaacctatcatc |
40950857 |
T |
|
| Q |
346 |
aaccaacaatacaccattgaaatcaactccaattaacaagttcc--gaagttttattacagaagtcattaataaaattccacaaccc |
430 |
Q |
| |
|
|||||||||||||| |||||||||| | ||||||| |||||||| ||||| |||||||| | |||||||||||| ||||||||||| |
|
|
| T |
40950856 |
aaccaacaatacactattgaaatcaccaccaattagcaagttcccagaagtcttattacatatgtcattaataaatttccacaaccc |
40950770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 465 - 560
Target Start/End: Complemental strand, 40950593 - 40950498
Alignment:
| Q |
465 |
aattattaataacataccaatctttatacatcaagccaaaaacctttttgaatttttcagctttaacaatagtttcaagcattacacaaatttcaa |
560 |
Q |
| |
|
|||||||||||| | |||||||| || |||| || ||| | || ||||||||||||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
40950593 |
aattattaataagagaccaatctctaaacattaaaccagagacttttttgaatttttcagctttaactctagtttcaagcaaaacacaaatttcaa |
40950498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 6e-55; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 153 - 319
Target Start/End: Original strand, 55714406 - 55714568
Alignment:
| Q |
153 |
ttgtaaccaactagtgttagcaagaaatatatctatcttagaatagattctatcattgctgacttggttattgcaccatgcatgtgtaataatctcctat |
252 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||| |
|
|
| T |
55714406 |
ttgtaaccaactagtgttagcaagaaatctatccatcttagaatagattctatcattgcttgcttggttgctgcaccatg----tgtaataatctcctat |
55714501 |
T |
|
| Q |
253 |
tgttcttacctctgaaagattattcatgaggagacaatctgcaaaatcttgaatttcctgttgagta |
319 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
55714502 |
tgttcttacctctgatagattattcaagaggagacaatttgcaaaatcttgaatttcctcttgagta |
55714568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 154 - 354
Target Start/End: Complemental strand, 5666464 - 5666268
Alignment:
| Q |
154 |
tgtaaccaactagtgttagcaagaaatatatctatcttagaatagattctatcattgctgacttggttattgcaccatgcatgtgtaataatctcctatt |
253 |
Q |
| |
|
||||||||| ||||| |||||| ||| |||||||||||||||||||||||||| || |||||||||||||||||| ||||||| |||||||| |
|
|
| T |
5666464 |
tgtaaccaagtagtgctagcaataaacctatctatcttagaatagattctatcaccacttgcttggttattgcaccatg----tgtaatactctcctatg |
5666369 |
T |
|
| Q |
254 |
gttcttacctctgaaagattattcatgaggagacaatctgcaaaatcttgaatttcctgttgagtaactggattaccactcaacctatcatcaaccaaca |
353 |
Q |
| |
|
|| ||||||||||| || ||||| | ||| || || || |||||||| ||||| || ||||| ||||||||||| ||| |||||||| |||| ||||||| |
|
|
| T |
5666368 |
gtccttacctctgagaggttatttaggagaaggcactcagcaaaatcgtgaatctcttgttgtgtaactggattcccattcaacctaccatcgaccaaca |
5666269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 354
Target Start/End: Original strand, 3940682 - 3940873
Alignment:
| Q |
159 |
ccaactagtgttagcaagaaatatatctatcttagaatagattctatcattgctgacttggttattgcaccatgcatgtgtaataatctcctattgttct |
258 |
Q |
| |
|
||||||||| ||||||| |||| |||||||||||||||| |||||||| || ||||||||| ||||| | || |||||||||| |||||||| |
|
|
| T |
3940682 |
ccaactagtattagcaataaatctatctatcttagaatatattctatctccactagtttggttattacaccaagtat----aataatctccgattgttct |
3940777 |
T |
|
| Q |
259 |
tacctctgaaagattattcatg-aggagacaatctgcaaaatcttgaatttcctgttgagtaactggattaccactcaacctatcatcaaccaacaa |
354 |
Q |
| |
|
|| ||||| || |||| ||| || |||||||| | |||||||||||| || |||||||| |||||||||||| | |||||||||||||||||| |
|
|
| T |
3940778 |
cacttctgatagcctatt-atgcagcagacaatcggaaaaatcttgaatctcatgttgagtcactggattaccattacgcctatcatcaaccaacaa |
3940873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 4e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 43 - 278
Target Start/End: Original strand, 1163090 - 1163322
Alignment:
| Q |
43 |
aacctgaatggggtattcctagcgaaagaaggacaagccatatccaagcttatagcatagtgattatatactactttaggataaacttcacccactaaat |
142 |
Q |
| |
|
|||||||| ||||||||||| | |||||||||||| ||| |||||| ||| ||| | |||||| | ||||| |||||||||| |||||||||| || || |
|
|
| T |
1163090 |
aacctgaacggggtattcctcgtaaaagaaggacaaaccaaatccaaacttttaggaaagtgatcaaatactcctttaggatacacttcacccattacat |
1163189 |
T |
|
| Q |
143 |
tacgaaatctttgtaacc-aactagtgttagcaagaaatatatctatcttagaatagattctatcattgctgacttggttattgcaccatgcatgtgtaa |
241 |
Q |
| |
|
||| ||| |||||||||| |||||||||| ||||||||| |||||||||||||||||||| ||| ||| || |||| ||||||||| ||||||||| |
|
|
| T |
1163190 |
tactaaaactttgtaaccaaactagtgttggcaagaaatctatctatcttagaatagattttataatttcttgcttgattattgcac----catgtgtaa |
1163285 |
T |
|
| Q |
242 |
taatctcctattgttcttacctctgaaagattattca |
278 |
Q |
| |
|
||||| ||||||||| |||||||||| ||| |||||| |
|
|
| T |
1163286 |
taatcccctattgtttttacctctgacagagtattca |
1163322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 72 - 349
Target Start/End: Original strand, 35168863 - 35169136
Alignment:
| Q |
72 |
aggacaagccatatccaagcttatagcatagtgattatatactactttaggataaacttcacccactaaattacgaaatctttgtaaccaactagtgtta |
171 |
Q |
| |
|
|||||||| |||||||| | ||||| | |||||| | ||||| |||||||| ||||||||||| | ||| || ||||| | ||||||||||||| |
|
|
| T |
35168863 |
aggacaagacatatccatacatataggacagtgatcagatactcctttaggaagaacttcacccagtgcattgttgaacctttgcagccaactagtgtta |
35168962 |
T |
|
| Q |
172 |
gcaagaaatatatctatcttagaatagattctatcattgctgacttggttattgcaccatgcatgtgtaataatctcctattgttcttacctctgaaaga |
271 |
Q |
| |
|
|||| |||| | ||||||||| ||||||||||||| || |||||||||| ||| ||||| |||| |||||| |||||||| || || || || |
|
|
| T |
35168963 |
gcaataaatctgtctatcttataatagattctatctccactagcttggttattacac----catgtataatgatctccgattgttctcacttccgatagc |
35169058 |
T |
|
| Q |
272 |
ttattcatgaggagacaatctgcaaaatcttgaatttcctgttgagtaactggattaccactcaacctatcatcaacc |
349 |
Q |
| |
|
||||| ||| ||||| || | |||||||||||| || |||| ||| |||||||||||| | | ||||||||||||| |
|
|
| T |
35169059 |
ttattatggagcagacattcggaaaaatcttgaatatcatgttcagtcactggattaccattaagcctatcatcaacc |
35169136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University