View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5099-Insertion-2 (Length: 1220)
Name: NF5099-Insertion-2
Description: NF5099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5099-Insertion-2 |
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Alignment Details
Target: chr8 (Bit Score: 840; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 840; E-Value: 0
Query Start/End: Original strand, 8 - 1063
Target Start/End: Complemental strand, 32815858 - 32814834
Alignment:
| Q |
8 |
aacttgttgtttaataaagacttattcatcattgacgtttccaattttacatgttttagctcagaaatcatcatcaagtaaaaatggctaccaataacaa |
107 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32815858 |
aacttgttgtttaataaagacatattcatcattgacgtttccaattttacatgttttagctcagaaatcatcatcaagtaaaaatggctaccaataacaa |
32815759 |
T |
|
| Q |
108 |
caatgaacaagaatcnnnnnnngcaactcattcttcttctactgctaaaattgagttgcctccagttgttgcgttgaatgaaagaatactttcttccatg |
207 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32815758 |
caatgaacaagaatcaaaaaaagcaactcattcttcttctactgctaaaattgagttgcctccagttgttgcgttgaatgaaagaatactttcttccatg |
32815659 |
T |
|
| Q |
208 |
gctgataagaaagatgctgctgctcatccatggcatgacttagagattggtattattattaactaactcttttttacgtttctttattcttctttctgct |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32815658 |
gctgataagaaagatgctgctgctcatccatggcatgacttagagattggtattattattaactaactcttttttacgtttctttattcttctttctgct |
32815559 |
T |
|
| Q |
308 |
tcaacaatctctccgtacttttaacaatatctttgaattctcataaatgcaggaccgggagctccatctgttttcaattgtgtaagtttcttttatttgc |
407 |
Q |
| |
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||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32815558 |
tcaacaatctctctgtacttttaaca-----------------taaatgcaggaccaggagctccatctgttttcaattgtgtaagtttctttt------ |
32815482 |
T |
|
| Q |
408 |
tgtattcnnnnnnnattcatgcattcaatgtttgtacttctagttaatgcaactaaacgaagtcttaataaatggtgtaaagtgaattctgttgttgtag |
507 |
Q |
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|||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32815481 |
--tatt----------tgatgtattcaatgtttgtacttctagttaatgcaactaaacgaagtcttaataaatggtgtaaagtgaattctgttgttgtag |
32815394 |
T |
|
| Q |
508 |
gtggttgaaattggcaaaggaagcaaggttaaatatgaactggacaagaaaagcggacttattaaggtatcattaatttcatctgattccgaaaatatcg |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
32815393 |
gtggttgaaattggcaaaggaagcaaggttaaatatgaactggacaagaaaagcggacttattaaggtatcattaatttcatctgattccgaaaatatgg |
32815294 |
T |
|
| Q |
608 |
ttgattcgatgggaaaatataaaggctgtttcttttaagggaatcatataataatttacaatttctacaattctgccaaattaattgtgaagacttattt |
707 |
Q |
| |
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| T |
32815293 |
ttgattcgatgggaaaatataaaggctgtttcttttaagggaatcatataataatttacaatttctacaattctgccaaattaattgtgaagacttattt |
32815194 |
T |
|
| Q |
708 |
tcctttgcaagcaccagattttacatgtctaagtttttacgagtaagattgataatgtttaatgtttaggttgcaaagtggtttgatttatagtatagac |
807 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32815193 |
tcctttgcaagcaccagattttacatgtctaagtttttacgagtaagattgataatgtttaatgtttaggttgcaaagtggtttgatttatagtatagac |
32815094 |
T |
|
| Q |
808 |
agatagaagttcaaaagataattcaaatactttcaattcgttgtggtttcatattatgtgttattgagctatgtactttagattgaaggtgtgttcaatg |
907 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32815093 |
agatagaagttcaaaagataatgcaaatactttcaattcgttgtggtttcatattatgtgttattgagctatgtactttagattgaaggtgtgttcaatg |
32814994 |
T |
|
| Q |
908 |
tccaatacatcggtgtttgacatgatcttaaatcatttgttaggtgtctttgatagtgtttcatagttattgagctataggatgtttc-atgtatttggt |
1006 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
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| T |
32814993 |
tccaatacatcggtgtttgacatgatcttaaatcatttgttaggtgtctttgatagtgtttcatagttattgagctataggatgtttcaatgtattt-gt |
32814895 |
T |
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| Q |
1007 |
gggtcctgctttatgtagat-atgctttgg-ttct-gatgt-aaatttgtgtttgtttgtt |
1063 |
Q |
| |
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| |||||||||||||||||| ||||||||| |||| ||||| ||||||||||||||||||| |
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| T |
32814894 |
gtgtcctgctttatgtagataatgctttggtttctggatgtaaaatttgtgtttgtttgtt |
32814834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 3e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 505 - 575
Target Start/End: Original strand, 29368039 - 29368109
Alignment:
| Q |
505 |
taggtggttgaaattggcaaaggaagcaaggttaaatatgaactggacaagaaaagcggacttattaaggt |
575 |
Q |
| |
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||||||||||||||||| ||||||| |||||| ||||||||||| |||||||||| |||||||||||||| |
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| T |
29368039 |
taggtggttgaaattggaaaaggaaacaaggtgaaatatgaacttgacaagaaaactggacttattaaggt |
29368109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 505 - 575
Target Start/End: Original strand, 43547797 - 43547867
Alignment:
| Q |
505 |
taggtggttgaaattggcaaaggaagcaaggttaaatatgaactggacaagaaaagcggacttattaaggt |
575 |
Q |
| |
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|||||| |||||||||| ||||||| |||||| ||||||||||| ||||| |||| |||||||||||||| |
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| T |
43547797 |
taggtgattgaaattgggaaaggaaacaaggtcaaatatgaacttgacaaaaaaactggacttattaaggt |
43547867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 506 - 581
Target Start/End: Original strand, 7985560 - 7985635
Alignment:
| Q |
506 |
aggtggttgaaattggcaaaggaagcaaggttaaatatgaactggacaagaaaagcggacttattaaggtatcatt |
581 |
Q |
| |
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||||| |||||||||||||||||||||||||||| ||||| ||||||||| ||| |||||||| ||||| ||||| |
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| T |
7985560 |
aggtgattgaaattggcaaaggaagcaaggttaagtatgagttggacaagacaagtggacttataaaggtgtcatt |
7985635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 509 - 579
Target Start/End: Complemental strand, 11775988 - 11775918
Alignment:
| Q |
509 |
tggttgaaattggcaaaggaagcaaggttaaatatgaactggacaagaaaagcggacttattaaggtatca |
579 |
Q |
| |
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||||||||||||||||||||||||| ||||| || |||||||||||||||| ||||| |||| |||||| |
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| T |
11775988 |
tggttgaaattggcaaaggaagcaatgttaagtaataactggacaagaaaagtagacttcttaaagtatca |
11775918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 350 - 396
Target Start/End: Original strand, 7985258 - 7985304
Alignment:
| Q |
350 |
ataaatgcaggaccgggagctccatctgttttcaattgtgtaagttt |
396 |
Q |
| |
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||||||||||| || ||||||||||| |||||||| ||||||||||| |
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| T |
7985258 |
ataaatgcagggccaggagctccatcagttttcaactgtgtaagttt |
7985304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 509 - 579
Target Start/End: Complemental strand, 3091263 - 3091193
Alignment:
| Q |
509 |
tggttgaaattggcaaaggaagcaaggttaaatatgaactggacaagaaaagcggacttattaaggtatca |
579 |
Q |
| |
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||||||||||||||||||||||||| |||| || ||| |||||||||||| ||||||||||| |||||| |
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| T |
3091263 |
tggttgaaattggcaaaggaagcaaaattaagtaataacgggacaagaaaagtggacttattaaagtatca |
3091193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 523 - 576
Target Start/End: Original strand, 49126470 - 49126523
Alignment:
| Q |
523 |
aaaggaagcaaggttaaatatgaactggacaagaaaagcggacttattaaggta |
576 |
Q |
| |
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|||||||||||||| ||||||||||| |||||||||| ||| | ||||||||| |
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| T |
49126470 |
aaaggaagcaaggtcaaatatgaacttgacaagaaaactggattaattaaggta |
49126523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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