View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5099-Insertion-4 (Length: 1146)
Name: NF5099-Insertion-4
Description: NF5099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5099-Insertion-4 |
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| [»] scaffold0054 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 634 - 1047
Target Start/End: Complemental strand, 7794377 - 7793957
Alignment:
| Q |
634 |
ataaaacatccaacat-ataatgtgacagtaaactttctagtacttgtgtatgaaactaaaaataactatccaacatttattcttttcaatgatttcaaa |
732 |
Q |
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|||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7794377 |
ataaaacatccaacattataatgtgatagtaaactttctagtacttgtgtatgaaactaaaaataactatccaacatttattcttttcaatgatttcaaa |
7794278 |
T |
|
| Q |
733 |
atcaattagtttgcaaataaaaagagactaaacattnnnnnnnnnnttataaatcaagatcaaatgatttcataatttagttccaaataatttttatatg |
832 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7794277 |
atcaattagtttgcaaataaaaagagactaaacattaaaaaaaaa-ttataaatcaagatcaaatgatttcataatttagttccaaataatttttatatg |
7794179 |
T |
|
| Q |
833 |
cataattgactagtcatttttcacaataggtaatttcttaataaccataatcatatacctcttgctgaaaaccagaaaacacaatcaattacttattcct |
932 |
Q |
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| T |
7794178 |
cacaattgactagtcatttttcacaaaaggtaatatcttaataaccataatcatatacctcttgctgaaaaccagaaaacacaatcaattacttattcct |
7794079 |
T |
|
| Q |
933 |
ccatcgcatgaatgatttccttgtatataa-tatctgag-tgaaatatcccttgctttatagcc-agctcctc-atcatt--ggtac-tagatcaaacca |
1025 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||| || |||||| ||||| |||||||||| | |
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| T |
7794078 |
ccatcgcatgaatgatttccttgtatataattatctgagttgaaatatcccttgctttatagccaagctcttcaatcatttgggtacttagatcaaacaa |
7793979 |
T |
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| Q |
1026 |
tgctaattctttgtcttttctt |
1047 |
Q |
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| T |
7793978 |
tactaattctctgtcttttctt |
7793957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 176; E-Value: 3e-94
Query Start/End: Original strand, 375 - 570
Target Start/End: Complemental strand, 7795677 - 7795482
Alignment:
| Q |
375 |
aacggtgataaaccaatggaaccagagataagagggagagagtccctgcaaccatatccagccaaagcagtgtcaccgtctctccattgtgttgtgtcat |
474 |
Q |
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| T |
7795677 |
aacggtgataaaccaatggaaccagagataagatggagagagtccctgcaaccatagccagccaaaccagcgtcaccgtctctccattgtgttgtgtcat |
7795578 |
T |
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| Q |
475 |
tcgggaataacgagtgtacgagaaaccaggtgttcgtttgggcgctggtagtccaacacttctgtttttctgtcttccgatttatctcttccctct |
570 |
Q |
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| T |
7795577 |
tcgggaataacgagtgtacgagaaaccaggtgttcgtttgggcgctggtagtccaacacttctgtttttctgtcttccgatttatctcttctctct |
7795482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 226 - 287
Target Start/End: Complemental strand, 7795825 - 7795764
Alignment:
| Q |
226 |
attaatattacgatgacaatacggtgaacattagcttgtattatagccaagagtgaagtgat |
287 |
Q |
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| T |
7795825 |
attaatattacgatgacaatatggtgaacattagcttgtattatagccaagagtgaagtgat |
7795764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 373 - 484
Target Start/End: Original strand, 7802498 - 7802607
Alignment:
| Q |
373 |
gcaacggtgataaaccaatggaaccagagataagagggagagagtccctgcaaccatatccagccaaagcagtgtcaccgtctctccattgtgttgtgtc |
472 |
Q |
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|||| |||||||| ||||||||||||||||||||| ||||| |||||||||||| | ||||||||||||| | |||| ||||||||||||||||| | |
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| T |
7802498 |
gcaatggtgataatccaatggaaccagagataagatggagat--tccctgcaaccacagccagccaaagcagcgccaccatctctccattgtgttgtata |
7802595 |
T |
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| Q |
473 |
attcgggaataa |
484 |
Q |
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||| |||||||| |
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| T |
7802596 |
atttgggaataa |
7802607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 587 - 633
Target Start/End: Complemental strand, 7795494 - 7795448
Alignment:
| Q |
587 |
atctcttctctatgtaagtggttatattgcacaaaaaagaattaaga |
633 |
Q |
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| T |
7795494 |
atctcttctctctgtaagtggttatattgcacaaaaaagaattaaga |
7795448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 860 - 960
Target Start/End: Complemental strand, 42446668 - 42446568
Alignment:
| Q |
860 |
aggtaatttcttaataaccataatcatatacctcttgctgaaaaccagaaaacacaatcaattacttattcctcc-atcgcatgaatgatttccttgtat |
958 |
Q |
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||||||| ||| || ||||| |||||||||||||||| ||||||| |||||| ||||| ||||| |||||||||| || | | ||||| ||||||||||| |
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| T |
42446668 |
aggtaatatctcaagaaccacaatcatatacctcttggtgaaaacaagaaaa-acaattaattaattattcctccaattggaagaatgttttccttgtat |
42446570 |
T |
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| Q |
959 |
at |
960 |
Q |
| |
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|| |
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| T |
42446569 |
at |
42446568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 284
Target Start/End: Original strand, 7802371 - 7802413
Alignment:
| Q |
242 |
caatacggtgaacattagcttgtattatagccaagagtgaagt |
284 |
Q |
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| T |
7802371 |
caatatggtgaacattatcttgtattaaagccaagagtgaagt |
7802413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 713 - 959
Target Start/End: Original strand, 33064 - 33313
Alignment:
| Q |
713 |
ttcttttcaatgatttcaaaatca-attagtttgcaaataaaaagagactaaacattnnnnnnnnnntt-ataaatcaagatcaaatgatttcataattt |
810 |
Q |
| |
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||||| |||||||||| ||||||| || |||| ||||||| |||||||||||||||| || ||||| ||| ||||| |||||||||||||| |
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| T |
33064 |
ttcttgtcaatgatttgaaaatcatatcagttagcaaatagaaagagactaaacattcaaaagaaagttgataaagcaatatcaattgatttcataattt |
33163 |
T |
|
| Q |
811 |
agttccaaataatttttatatgcataattgactagtcatttttcacaataggtaatt-tcttaataaccataatcatatacctcttgctgaaaaccagaa |
909 |
Q |
| |
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| || ||||||| | ||||||| |||| ||| || ||| |||| ||||||| ||| |||||||| |||||||||||||||| ||||||| ||| |
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| T |
33164 |
atttgacaataattgtgatatgcacaattttatagccactttgcacacaaggtaataatctcaataaccacaatcatatacctcttggtgaaaacatgaa |
33263 |
T |
|
| Q |
910 |
aacacaatcaattacttattcc-tccatcgcatgaatgatttccttgtata |
959 |
Q |
| |
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|| | ||| ||||||||||||| || || ||| ||||| |||||||||||| |
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| T |
33264 |
aa-ataattaattacttattccttcaatggcaagaatgttttccttgtata |
33313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 867 - 932
Target Start/End: Original strand, 39572 - 39636
Alignment:
| Q |
867 |
ttcttaataaccataatcatatacctcttgctgaaaaccagaaaacacaatcaattacttattcct |
932 |
Q |
| |
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| T |
39572 |
ttctcaataaccacgatcatatacctcttggtgaaaacaagaaaa-ataattaattacttattcct |
39636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 781 - 911
Target Start/End: Complemental strand, 29145706 - 29145576
Alignment:
| Q |
781 |
ataaatcaagatcaaatgatttcataatttagttccaaataatttttatatgcataattgactagtcatttttcacaataggtaatttcttaataaccat |
880 |
Q |
| |
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||||| ||||||||| ||||||||||||||| || ||||||| | ||||||| ||||||| | || ||| || || | ||||| ||| || ||||| |
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| T |
29145706 |
ataaagcaagatcaattgatttcataatttacttgacaataattgtgatatgcacaattgacaaaccagtttgcataaaatgtaatatctcaacaaccac |
29145607 |
T |
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| Q |
881 |
aatcatatacctcttgctgaaaaccagaaaa |
911 |
Q |
| |
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|||||||||||||||| ||| ||| |||||| |
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| T |
29145606 |
aatcatatacctcttggtgataacaagaaaa |
29145576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 115
Target Start/End: Complemental strand, 54292792 - 54292758
Alignment:
| Q |
81 |
tttcatttgttgctaaagaagattggtttagatag |
115 |
Q |
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|||||||||||| |||||||||||||||||||||| |
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| T |
54292792 |
tttcatttgttgataaagaagattggtttagatag |
54292758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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