View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5099-Insertion-5 (Length: 1140)
Name: NF5099-Insertion-5
Description: NF5099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5099-Insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 643; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 8 - 1000
Target Start/End: Original strand, 1370334 - 1371297
Alignment:
| Q |
8 |
atagaaggacttcctattttatgtgaggattcacatcataatattgtacatgttgtggacattcttgtgcaaattcttggaactggtaagttgtttcttg |
107 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1370334 |
atagaaggacttcctattttatttgaggattcacatcataatattgaaaatgttgtggacatttttgtgcaaattcttggaactggtaagttgtttcttg |
1370433 |
T |
|
| Q |
108 |
ttaatatattgcattcttgagttgagattatggtggtcttgattgtgatannnnnnnnnnnnnnngacttgattcttttagcggagtcatcggagcatct |
207 |
Q |
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| T |
1370434 |
ttaatatattgcattcttgagttgagattatggtggtcttgattgtgatattttttctttttt--gacttgattcttttagcggagtcattggagcatct |
1370531 |
T |
|
| Q |
208 |
tgatgctgtggtttgggctctaatgtctcttctagggcaggatgtgaaaggtcatttgatgtctctatgttaatatacagttaaatgattctaataattg |
307 |
Q |
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| T |
1370532 |
tgatgctgtggtttggactctaatgtctcttctagggcaggatgtgaaaggtcatttgatgtctctatgttaatatacagttaaatgattctaataattg |
1370631 |
T |
|
| Q |
308 |
gttttttacttatagtagtctaattgcaaatgcagcttctttgaaggctttgtttaagcatgttacttctggta-gatagagccgaatacagacgatgtt |
406 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||| || ||||||||||||||| |||||||||||| |||||||| |
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| T |
1370632 |
gttttttacttataatagtctaattgcaaatgcagctt------------------ag-atgttacttctggtatgatagagccgaa-----acgatgtt |
1370707 |
T |
|
| Q |
407 |
attcgtgaaaaggttatgaactttcttagagataaggtgagaaatcatgtgtttgatttataaatgtcaattatcattggatctttaatatcgaaatgaa |
506 |
Q |
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| T |
1370708 |
attcgtgaaaaggttatgaactttcttagagataaggtgagaaattatgtgtttgatttataaatgtcaattatcattggatctttaatatcgaaatgaa |
1370807 |
T |
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| Q |
507 |
cattgatcaattctaaatatttccaatacaggtcttcccttttaaagcagaactcttgaagcctcaagctgaaatggaaagatacataactgatctaata |
606 |
Q |
| |
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| T |
1370808 |
cattgatcaattctaaatatttccaatacaggtattcccttttaaagcagaactcttgaagcctcaaggtgaaatggaaagatgcataactgatctaata |
1370907 |
T |
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| Q |
607 |
aaaaaggtattcacaattgctttgagtcgtttttaacgagttcatttgttgatttatttattgtctaa-nnnnnnngtaacataattggaattgatgtat |
705 |
Q |
| |
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| T |
1370908 |
aaaaaggtattcacaattgctttgagtcatttttaacgagttcatttgttgatttatttattgtctaattttttttgtaacataattggaattgatgtat |
1371007 |
T |
|
| Q |
706 |
gtttgtggttgcttttcatttcagagtttagaagatgtaaatgatatagaatttcaaatatttatggattcctgatgagtttgagcctatttggagaaaa |
805 |
Q |
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| T |
1371008 |
gtttgtggttgcttttcatttcagagtttagaatatgtaaatgatatagaatttcaaatatttatggattcctgatgagtttgagcctatttggagaaaa |
1371107 |
T |
|
| Q |
806 |
tgctccagctgagtggatgcaagagctgattac-atcatggaaaatccagctgatttagatgctatattcatggtgattannnnnnnnnccctttctcct |
904 |
Q |
| |
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| T |
1371108 |
tgctccagctgagtggatgcaagagctgattacaatcatggaaaatcaagctgatttagatgctatattcatggtgatta-ttttttttccctttct-ct |
1371205 |
T |
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| Q |
905 |
ttatgtttggttttatatgtgagatgcatgtgacaagagtttgcttttccgcattctttat-aacccgga-cagactgttcaaccgggtggacgcctc |
1000 |
Q |
| |
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| T |
1371206 |
ttatgttt-gttttatatgtgag----atgtgacaagaatttg-ttttacgcaatgtttataaaaccgtaccagactgttcaaccggttggacgcctc |
1371297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 536 - 833
Target Start/End: Complemental strand, 34613551 - 34613261
Alignment:
| Q |
536 |
aggtcttcccttttaaagcagaactcttgaagcctcaagctgaaatggaaagatacataactgatctaataaaaaaggtattcacaattgctttgagtcg |
635 |
Q |
| |
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||||||||||| ||||||| ||||| |||||||| |||| ||||||||| | ||||||| |||||||||||||| ||||||||| || |||||| | | |
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| T |
34613551 |
aggtcttccctattaaagctgaactgttgaagccccaagaggaaatggaacggcacataaccgatctaataaaaaatgtattcacagtttctttgatttg |
34613452 |
T |
|
| Q |
636 |
tttttaacgagttcatttgttgatttatttattgtctaannnnnnngtaacataattggaattgatgtatgtttgtggttgcttttcatttcagagttta |
735 |
Q |
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| T |
34613451 |
ttttttacccgttcatttatggatttatt-agtgtttaatatttt-gtaacataattggagtttatgcatgct-gtggtt-----tcatttcagagttta |
34613360 |
T |
|
| Q |
736 |
gaagatgtaaatgatatagaatttcaaatatttatggatt-cctgatgagtttgagcctatttggagaaaatgctccagctgagtggatgcaagagctg |
833 |
Q |
| |
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||||| |||| || ||||||||||| ||| |||||||||| ||||| |||||||||||||||||||||||| |||||||||||| | ||| |||||||| |
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| T |
34613359 |
gaagacgtaactggtatagaatttcgaatgtttatggatttcctgaagagtttgagcctatttggagaaaaggctccagctgagcgtatggaagagctg |
34613261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 405 - 450
Target Start/End: Complemental strand, 34613669 - 34613624
Alignment:
| Q |
405 |
ttattcgtgaaaaggttatgaactttcttagagataaggtgagaaa |
450 |
Q |
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| T |
34613669 |
ttattcgtgaaaaggttataaattttgttagagataaggtgagaaa |
34613624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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