View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5099-Insertion-7 (Length: 345)

Name: NF5099-Insertion-7
Description: NF5099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5099-Insertion-7
NF5099-Insertion-7
[»] chr5 (1 HSPs)
chr5 (8-345)||(39446973-39447312)


Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 8 - 345
Target Start/End: Original strand, 39446973 - 39447312
Alignment:
Q  8 cgatacacttgaattaatattgctccacttagacctagaaatccctatcaacaaagacatcaaatgcccaaatatgaacacgatgcaatgctagacacca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39446973 cgatacacttgaattaatattgctccacttagacctagaaatccctatcaacaaagacatcaaatgcccaaatatgaacacgatgcaatgctagacacca 39447072  T
Q  108 aaaattgaaggctatatgctaaacagttgttaagaaaataatgtaaaataacttcgtgatcttaaaacttcaattatatcaaaaaact-aactcaatggt 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  39447073 aaaattgaaggctatatgctaaacagttgttaagaaaataatgtaaaataacttcgtgatcttaaaacttcaattatatcaaaaaactaaactcaatggt 39447172  T
Q  207 aatacccattattaagcaatcataaaacttaacacccatcattaactcccaactatttctgcaacttgatgttgcttatttctgcgtttcatcaacattg 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  39447173 aatacccattattaagcaatcataaaacttaacacccatcattaacacccaactatttctgcaacttgatgttgcttatttctgcatttcatcaacattg 39447272  T
Q  307 catttattagaatcatgaaatat-acaagcaaattgaaaa 345  Q
    ||||||||| ||||||||||||| | ||||||||||||||    
T  39447273 catttattaaaatcatgaaatataaaaagcaaattgaaaa 39447312  T

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