View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5099_high_2 (Length: 372)

Name: NF5099_high_2
Description: NF5099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5099_high_2
NF5099_high_2
[»] chr3 (2 HSPs)
chr3 (21-198)||(45633678-45633855)
chr3 (199-365)||(11136570-11136736)
[»] chr2 (2 HSPs)
chr2 (199-365)||(7314051-7314217)
chr2 (21-85)||(19185153-19185215)
[»] scaffold0010 (1 HSPs)
scaffold0010 (268-365)||(245939-246036)
[»] chr7 (1 HSPs)
chr7 (268-365)||(37282162-37282259)
[»] scaffold0716 (1 HSPs)
scaffold0716 (318-365)||(7245-7292)
[»] chr5 (1 HSPs)
chr5 (268-338)||(40933961-40934032)
[»] scaffold0894 (1 HSPs)
scaffold0894 (319-365)||(1-47)
[»] chr6 (1 HSPs)
chr6 (268-338)||(11232957-11233029)
[»] chr1 (1 HSPs)
chr1 (268-343)||(23348366-23348440)
[»] chr4 (1 HSPs)
chr4 (35-127)||(29384816-29384906)


Alignment Details
Target: chr3 (Bit Score: 158; Significance: 5e-84; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 21 - 198
Target Start/End: Original strand, 45633678 - 45633855
Alignment:
Q  21 agagagcggagaagaaattaaactgataaatgaaagtgagagagaaagggtgtgtaaggtttgatttgtaatatgttttttaaatgaaaaataatttaat 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||| | |||||||||||||||||||||||||||    
T  45633678 agagagcggagaagaaattaaactgataaatgaaagtgagagagagagggtgtgtaaggtttaatatgtattttgttttttaaatgaaaaataatttaat 45633777  T
Q  121 ttccaccaggcaaaagatgccacatcagcaggtgtagtaaagggtgtacaaaacaaagtggtcgatctatcatttctc 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45633778 ttccaccaggcaaaagatgccacatcagcaggtgtagtaaagggtgtacaaaacaaagtggtcgatctatcatttctc 45633855  T

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Target: chr3; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 199 - 365
Target Start/End: Complemental strand, 11136736 - 11136570
Alignment:
Q  199 ttaaaaataagacttctggtgatatataacaaaaggtaatggtagtttttgatatagtttccaagcacttttctcatggacatattttttgaagtcgtat 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  11136736 ttaaaaataagacttctggtgatatataacaaaaggtaatggtagtttttgatatagtttccaagcacttttctcatggacatattttttgaagtcgtgt 11136637  T
Q  299 ttgatggctgaattgttttgtcctgttgtaagttccattatcaaatattgacctatatgtgcctttg 365  Q
    ||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  11136636 ttgatggcgtaattgttttatcctgttgtaagttccattatcaaatattgacctatatgtgcctttg 11136570  T

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Target: chr2 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 199 - 365
Target Start/End: Complemental strand, 7314217 - 7314051
Alignment:
Q  199 ttaaaaataagacttctggtgatatataacaaaaggtaatggtagtttttgatatagtttccaagcacttttctcatggacatattttttgaagtcgtat 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7314217 ttaaaaataagacttctggtgatatataacaaaaggtaatggtagtttttgatatagtttccaagcacttttctcatggacatattttttgaagtcgtat 7314118  T
Q  299 ttgatggctgaattgttttgtcctgttgtaagttccattatcaaatattgacctatatgtgcctttg 365  Q
    ||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  7314117 ttgatggcataattgttttatcctgttgtaagttccattatcaaatattgacctatatgtgcctttg 7314051  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 19185215 - 19185153
Alignment:
Q  21 agagagcggagaagaaattaaactgataaatgaaagtgagagagaaagggtgtgtaaggtttgat 85  Q
    |||||| || |||||||| ||||||| ||||| |||||||| |||  ||||||||||||||||||    
T  19185215 agagagaggcgaagaaataaaactgagaaatggaagtgagaaaga--gggtgtgtaaggtttgat 19185153  T

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Target: scaffold0010 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 268 - 365
Target Start/End: Original strand, 245939 - 246036
Alignment:
Q  268 tttctcatggacatattttttgaagtcgtatttgatggctgaattgttttgtcctgttgtaagttccattatcaaatattgacctatatgtgcctttg 365  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  245939 tttctcatggacatattttttaaagtcgtatttgatggcagaattgttttgtcctgttgtaagttccattatcaaatattgacctatatgtgcatttg 246036  T

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Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 268 - 365
Target Start/End: Complemental strand, 37282259 - 37282162
Alignment:
Q  268 tttctcatggacatattttttgaagtcgtatttgatggctgaattgttttgtcctgttgtaagttccattatcaaatattgacctatatgtgcctttg 365  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  37282259 tttctcatggacatattttttaaagtcgtatttgatggcagaattgttttgtcccgttgtaagttccattatcaaatattgacctatatgtgcatttg 37282162  T

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Target: scaffold0716 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0716
Description:

Target: scaffold0716; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 318 - 365
Target Start/End: Original strand, 7245 - 7292
Alignment:
Q  318 gtcctgttgtaagttccattatcaaatattgacctatatgtgcctttg 365  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7245 gtcctgttgtaagttccattatcaaatattgacctatatgtgcctttg 7292  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 268 - 338
Target Start/End: Original strand, 40933961 - 40934032
Alignment:
Q  268 tttctcatggacatattttttgaa-gtcgtatttgatggctgaattgttttgtcctgttgtaagttccatta 338  Q
    ||||||||||||||||||||| || |||||||||||| |||||||||||||||||| |||||| ||||||||    
T  40933961 tttctcatggacatatttttttaaagtcgtatttgatagctgaattgttttgtccttttgtaaattccatta 40934032  T

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Target: scaffold0894 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0894
Description:

Target: scaffold0894; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 319 - 365
Target Start/End: Original strand, 1 - 47
Alignment:
Q  319 tcctgttgtaagttccattatcaaatattgacctatatgtgcctttg 365  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  1 tcctgttgtaagttccattatcaaatattgacctatatgtgcctttg 47  T

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Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 268 - 338
Target Start/End: Original strand, 11232957 - 11233029
Alignment:
Q  268 tttctcatggacatattttttgaa--gtcgtatttgatggctgaattgttttgtcctgttgtaagttccatta 338  Q
    |||||||||||| |||||||||||  |||||||||||| |||||||||||||||||| |||||| ||||||||    
T  11232957 tttctcatggacgtattttttgaaaagtcgtatttgatagctgaattgttttgtccttttgtaaattccatta 11233029  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 268 - 343
Target Start/End: Original strand, 23348366 - 23348440
Alignment:
Q  268 tttctcatggacatattttttgaagtcgtatttgatggctgaattgttttgtcctgttgtaagttccattatcaaa 343  Q
    ||||||||||||| ||||||| ||||||||||||||     |||||||||||  ||||||||||||||||||||||    
T  23348366 tttctcatggacagatttttt-aagtcgtatttgatataaaaattgttttgttttgttgtaagttccattatcaaa 23348440  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 127
Target Start/End: Complemental strand, 29384906 - 29384816
Alignment:
Q  35 aaattaaactgataaatgaaagtgagagagaaagggtgtgtaaggtttgatttgtaatatg-ttttttaaatgaaaaataatttaatttccacc 127  Q
    |||| ||| ||| ||||| ||||||||||||  |||||||||||||||||| | || | || |||||||||| |||||||||||||||||||||    
T  29384906 aaatgaaattgagaaatggaagtgagagaga--gggtgtgtaaggtttgatct-tattttgtttttttaaataaaaaataatttaatttccacc 29384816  T

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