View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5099_low_1 (Length: 397)
Name: NF5099_low_1
Description: NF5099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5099_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 85 - 387
Target Start/End: Complemental strand, 1915419 - 1915118
Alignment:
| Q |
85 |
ccaatcactttgccaacaatattccctttcttttctccaccaccttcaaaaaccaacccttgaagttcatgtcaagtgtgttttatagatatatttatca |
184 |
Q |
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| T |
1915419 |
ccaaacactttgccgacaatattccctttcttttctccaccaccttcaaaaaccaacccttgaagttcatgtcaagtgtgttttatagatatatttatca |
1915320 |
T |
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| Q |
185 |
tattatacattattcattagttgttgggtgtgtgtcatatatcgccttcatttttcttcagacttgcgtgcatgggatgttatatattccctttcnnnnn |
284 |
Q |
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| T |
1915319 |
tattatacattgttcattagttgttgggtgtgtgtcatatatcgccttcatttttcttcagacttgcgtgcatgggatgttatatattccctttcttttt |
1915220 |
T |
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| Q |
285 |
nncattattttatgtacttggagatatgttgtaataggtacactatatg---ataaataaaagttttatttcataatgtacgtacgtacatgcttatttt |
381 |
Q |
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| T |
1915219 |
ttcattattttatgtacttggagatatgttgtaataggtacactatatgataataaataaaagttttatttcataat----gtacgtacatgcttatttt |
1915124 |
T |
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| Q |
382 |
cctatg |
387 |
Q |
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|||||| |
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| T |
1915123 |
cctatg |
1915118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 31 - 70
Target Start/End: Complemental strand, 1915452 - 1915413
Alignment:
| Q |
31 |
ccatctattccacagttcaatcttccaccacttccaaaca |
70 |
Q |
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| T |
1915452 |
ccatctattccccagttcactcttccaccacttccaaaca |
1915413 |
T |
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