View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5099_low_3 (Length: 371)
Name: NF5099_low_3
Description: NF5099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5099_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 11319509 - 11319160
Alignment:
| Q |
1 |
caagagtgttctatatggtgtgaagaaaattaaattaattatattggtttattggcaagaaaggcttaattatatgctcataaaacgctttaacgtttct |
100 |
Q |
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| T |
11319509 |
caagagtgttctatatggtgtgaagaaaattaaattaattatattggtt-attggcaagaaaggcttaattatatgctcataaaacgctttaacgtttct |
11319411 |
T |
|
| Q |
101 |
tctatagttttcttcattttgatgtttcttagttgcagctgaaatgtatgctttgttcatgggaaaatagaactctgattcggcgtttcctgtgttcctt |
200 |
Q |
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| T |
11319410 |
tctatagttttcttcattttgatgtttcttagttgcagctgaaatgtatgctttgttcatgggaaaatagaactctgattcggcgtttcctgtgttcctc |
11319311 |
T |
|
| Q |
201 |
agatcatattttttctgaattttgtaatttcatgttattgcacactgagttctgatggatgaaaagagctgtattcaaagaaaaaatgttgttgcataat |
300 |
Q |
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| T |
11319310 |
agatcatgttttttctgaattttataatttcatgttattgcacactgagttctgatggatgaaaagagctgtattgaaagaaaaaatgttgttgcataat |
11319211 |
T |
|
| Q |
301 |
tatgagactagagagacaaagaagttctaggcatccttaatgccattagct |
351 |
Q |
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| T |
11319210 |
tatgagactagagagacaaagaagttctaggcatccttaatgccattagct |
11319160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 11477530 - 11477181
Alignment:
| Q |
1 |
caagagtgttctatatggtgtgaagaaaattaaattaattatattggtttattggcaagaaaggcttaattatatgctcataaaacgctttaacgtttct |
100 |
Q |
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| T |
11477530 |
caagagtgttctatatggtgtgaagaaaattaaattaattatattggtt-attggcaagaaaggcttaattatatgctcataaaacgctttaacgtttct |
11477432 |
T |
|
| Q |
101 |
tctatagttttcttcattttgatgtttcttagttgcagctgaaatgtatgctttgttcatgggaaaatagaactctgattcggcgtttcctgtgttcctt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11477431 |
tctatagttttcttcattttgatgtttcttagttgcagctgaaatgtatgctttgttcatgggaaaatagaactctgattcggcgtttcctgtgttcctc |
11477332 |
T |
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| Q |
201 |
agatcatattttttctgaattttgtaatttcatgttattgcacactgagttctgatggatgaaaagagctgtattcaaagaaaaaatgttgttgcataat |
300 |
Q |
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| T |
11477331 |
agatcatgttttttctgaattttataatttcatgttattgcacactgagttctgatggatgaaaagagctgtattgaaagaaaaaatgttgttgcataat |
11477232 |
T |
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| Q |
301 |
tatgagactagagagacaaagaagttctaggcatccttaatgccattagct |
351 |
Q |
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| T |
11477231 |
tatgagactagagagacaaagaagttctaggcatccttaatgccattagct |
11477181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 179
Target Start/End: Original strand, 56401904 - 56401989
Alignment:
| Q |
95 |
gtttcttctatagttttcttcattttgatgtttcttagttgcagctgaaatgtatgctttgttc-atgggaaaatagaactctgat |
179 |
Q |
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||||||| |||| ||||| |||||||||| ||||||||||||||||||| |||||||||||| | ||||||| |||||| |||| |
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| T |
56401904 |
gtttcttttataattttcatcattttgatacttcttagttgcagctgaaaaatatgctttgttcaaggggaaaagagaactttgat |
56401989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 18905260 - 18905203
Alignment:
| Q |
100 |
ttctatagttttcttcattttgatgtttcttagttgcagctgaaatgtatgctttgtt |
157 |
Q |
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| T |
18905260 |
ttctataattctctccattttgatatttcttagttgcagctaaattttatgctttgtt |
18905203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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