View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5099_low_5 (Length: 237)
Name: NF5099_low_5
Description: NF5099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5099_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 40003816 - 40003596
Alignment:
| Q |
1 |
aacaagccacatgaattgaatgcgtagccactccttcttgagcaccatgtataactgtgctcacatatactatcactagctgtccatatgcaatcctttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
40003816 |
aacaagccacatgaattgaatgcgtagccactccttcttgagcaccatgtataactgtgctcacatatactatcacaagctgtccatatgcaatcctttt |
40003717 |
T |
|
| Q |
101 |
agtcaacaagtgtgtcgatttgggcagcgccaccacaaatgcaccggtagccacggctagcgcagccatacagttgctgaagttatcgggtcttataact |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40003716 |
agtcaacaagtgtgtcgatttgggcagcgccaccacaaatgcaccggtagccacggctagcgcagccatacagttgctgaagttatcgggtcttataact |
40003617 |
T |
|
| Q |
201 |
tgcaagctaagtagagaaaaa |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
40003616 |
tgcaagctaagtagagaaaaa |
40003596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 22940122 - 22940342
Alignment:
| Q |
1 |
aacaagccacatgaattgaatgcgtagccactccttcttgagcaccatgtataactgtgctcacatatactatcactagctgtccatatgcaatcctttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
22940122 |
aacaagccacatgaattgaatgcgtagccactccttcttgaggaccatgtataactgtgctcacatatactatcacaagatgtccatatgcaatcctttt |
22940221 |
T |
|
| Q |
101 |
agtcaacaagtgtgtcgatttgggcagcgccaccacaaatgcaccggtagccacggctagcgcagccatacagttgctgaagttatcgggtcttataact |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
22940222 |
agtcaacaagtgtgtcgatttgggcagcgccaccacaaatgcaccggtagccacggctagcgcagccatacagttgctgaagttatcgagtcttataact |
22940321 |
T |
|
| Q |
201 |
tgcaagctaagtagagaaaaa |
221 |
Q |
| |
|
|||||||||| |||||||||| |
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| T |
22940322 |
tgcaagctaattagagaaaaa |
22940342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 27287951 - 27287731
Alignment:
| Q |
1 |
aacaagccacatgaattgaatgcgtagccactccttcttgagcaccatgtataactgtgctcacatatactatcactagctgtccatatgcaatcctttt |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||| || |||||||||||||||||||| |
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|
| T |
27287951 |
aacaagccacatgaattgaatgtgtagccactccttcttgaggaccatgtataactgttctcacatatactatcacaagttgtccatatgcaatcctttt |
27287852 |
T |
|
| Q |
101 |
agtcaacaagtgtgtcgatttgggcagcgccaccacaaatgcaccggtagccacggctagcgcagccatacagttgctgaagttatcgggtcttataact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27287851 |
agtcaacaagtgtgtcgatttgggcagcgccaccacaaatgcaccggtagccacggctagcgcagccatacagttgctgaagttatcgggtcttataact |
27287752 |
T |
|
| Q |
201 |
tgcaagctaagtagagaaaaa |
221 |
Q |
| |
|
|||||||||| |||||||||| |
|
|
| T |
27287751 |
tgcaagctaattagagaaaaa |
27287731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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