View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5099_low_7 (Length: 232)
Name: NF5099_low_7
Description: NF5099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5099_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 7357022 - 7357237
Alignment:
| Q |
1 |
ccaccaacactaccactttcaaaagccgatgtcatttcacaaccacttcccattattcccttactctcaccactagaaaccttatcgaatttaacaacca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
7357022 |
ccaccaacactaccactttcaaaagccgatgtcatttcacaaccacttcccattattcccttactctcaccactagaaaccttatcgaatttaacagcca |
7357121 |
T |
|
| Q |
101 |
ccctatgttcttgtcttccaatgtccgcgtggatctttggtatactagagttggtcgccggagcatgtgtggacttgaaacaaacacaacctcttggatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
7357122 |
ccctatgttcttgtcttccaatgtccgcgtggatctttggtatactagagttggtcggccgagcatgtgtggacttgaaacaaacacaacctcttggatt |
7357221 |
T |
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| Q |
201 |
tctttaacaaatgtag |
216 |
Q |
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|||||||||||||||| |
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| T |
7357222 |
tctttaacaaatgtag |
7357237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 29791153 - 29791356
Alignment:
| Q |
1 |
ccaccaacactaccactttcaaaagccgatgtcatttcacaaccacttcccattattcccttactctcaccactagaaaccttatcgaatttaacaacca |
100 |
Q |
| |
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|||||||||||||||||| |||||| ||| || ||||||| |||||||||| | |||| ||||||||||||| ||||||||||| |||||||||||| |
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| T |
29791153 |
ccaccaacactaccacttccaaaagacgacgtggtttcacacccacttcccactgttcctctactctcaccacttgaaaccttatcagatttaacaacca |
29791252 |
T |
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| Q |
101 |
ccctatgttcttgtcttccaatgtccgcgtggatctttggtatactagagttggtcgccggagcatgtgtggacttgaaacaaacacaacctcttggatt |
200 |
Q |
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| | |||||||||||||||||||||| ||||||||| ||| ||| |||| |||||||||||||||||||||| || |||| ||| | |||||| ||| |
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| T |
29791253 |
cgcgatgttcttgtcttccaatgtccacgtggatctctgg--taccggagtaggtcgccggagcatgtgtggacctggaacatgcacgatctcttgtatt |
29791350 |
T |
|
| Q |
201 |
tcttta |
206 |
Q |
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|||||| |
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| T |
29791351 |
tcttta |
29791356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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