View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5099_low_8 (Length: 219)

Name: NF5099_low_8
Description: NF5099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5099_low_8
NF5099_low_8
[»] scaffold0323 (1 HSPs)
scaffold0323 (1-202)||(2298-2499)
[»] chr1 (5 HSPs)
chr1 (3-202)||(22084234-22084433)
chr1 (1-197)||(41370825-41371021)
chr1 (5-181)||(22796659-22796835)
chr1 (1-181)||(21308473-21308653)
chr1 (1-57)||(22687023-22687079)
[»] scaffold0101 (1 HSPs)
scaffold0101 (3-198)||(48374-48569)
[»] chr8 (2 HSPs)
chr8 (1-181)||(1733078-1733258)
chr8 (5-170)||(22335573-22335738)
[»] chr3 (9 HSPs)
chr3 (3-194)||(14685325-14685517)
chr3 (1-181)||(10790271-10790451)
chr3 (4-197)||(7343637-7343830)
chr3 (1-202)||(10168942-10169143)
chr3 (2-180)||(12846859-12847037)
chr3 (1-57)||(134547-134603)
chr3 (1-180)||(13040408-13040587)
chr3 (1-180)||(13048485-13048664)
chr3 (1-65)||(12023830-12023894)
[»] chr7 (3 HSPs)
chr7 (1-197)||(14325887-14326083)
chr7 (34-202)||(18161608-18161776)
chr7 (1-52)||(13348790-13348841)
[»] chr6 (3 HSPs)
chr6 (1-197)||(16312458-16312654)
chr6 (5-202)||(23494329-23494526)
chr6 (7-202)||(19027542-19027737)
[»] scaffold0253 (1 HSPs)
scaffold0253 (1-197)||(25355-25551)
[»] scaffold0051 (1 HSPs)
scaffold0051 (1-202)||(77565-77766)
[»] chr2 (5 HSPs)
chr2 (5-202)||(22646330-22646527)
chr2 (5-202)||(23618317-23618514)
chr2 (5-180)||(23192733-23192908)
chr2 (1-62)||(24957784-24957845)
chr2 (1-57)||(23804763-23804819)
[»] scaffold0040 (1 HSPs)
scaffold0040 (5-202)||(39120-39317)
[»] scaffold0022 (1 HSPs)
scaffold0022 (5-202)||(31695-31892)
[»] chr4 (3 HSPs)
chr4 (5-202)||(13279380-13279577)
chr4 (5-202)||(14559044-14559241)
chr4 (5-202)||(14716293-14716490)
[»] scaffold0064 (2 HSPs)
scaffold0064 (5-202)||(29507-29704)
scaffold0064 (5-202)||(41498-41695)
[»] chr5 (1 HSPs)
chr5 (1-181)||(21528081-21528261)
[»] scaffold0241 (1 HSPs)
scaffold0241 (5-202)||(22866-23063)
[»] scaffold0108 (1 HSPs)
scaffold0108 (7-180)||(41985-42158)
[»] scaffold0304 (1 HSPs)
scaffold0304 (46-202)||(7939-8095)
[»] scaffold0270 (1 HSPs)
scaffold0270 (5-178)||(23528-23701)
[»] scaffold0193 (1 HSPs)
scaffold0193 (1-202)||(28900-29101)
[»] scaffold0130 (1 HSPs)
scaffold0130 (4-202)||(39263-39461)
[»] scaffold0319 (1 HSPs)
scaffold0319 (5-150)||(8130-8275)
[»] scaffold0023 (2 HSPs)
scaffold0023 (5-181)||(82817-82993)
scaffold0023 (1-179)||(15532-15710)
[»] scaffold0019 (1 HSPs)
scaffold0019 (1-196)||(153560-153755)
[»] scaffold0081 (1 HSPs)
scaffold0081 (7-202)||(46385-46580)
[»] scaffold0001 (2 HSPs)
scaffold0001 (1-202)||(117493-117694)
scaffold0001 (1-202)||(387863-388064)
[»] scaffold0107 (1 HSPs)
scaffold0107 (1-196)||(26929-27124)
[»] scaffold0046 (1 HSPs)
scaffold0046 (1-147)||(28629-28775)
[»] scaffold0013 (3 HSPs)
scaffold0013 (1-147)||(110773-110919)
scaffold0013 (3-173)||(117603-117773)
scaffold0013 (1-173)||(125455-125627)
[»] scaffold0026 (1 HSPs)
scaffold0026 (71-181)||(120473-120583)
[»] scaffold1171 (1 HSPs)
scaffold1171 (1-57)||(579-635)


Alignment Details
Target: scaffold0323 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 2298 - 2499
Alignment:
Q  1 cctttgtttttcttcgattttttctgcacagtgtgaaaagcaaggatcagttcaggacgtagagtgtcaagatcaatacgatcggattggtgcttaaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||| |||||||||||||||||||||||||    
T  2298 cctttgtttttcttcgattttttctgcacagtgtgaaaagcaaggattagttcaggaagtagagtgtcaggatctatacgatcggattggtgcttaaaat 2397  T
Q  101 agcactatcaccatcgataaaacacttctgtgcatgcaaaagatgaagtaaatggcttgggttcaaaaataagcttttgccattaaacccgacgcagggt 200  Q
    ||||||  ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  | || | |||||||||||||    
T  2398 agcactgccaccatcgatagaacacttccgtgcatgcaaaagatgaagtaaatggcttgggttcaaaaataagcttttctcgttgagcccgacgcagggt 2497  T
Q  201 ag 202  Q
    ||    
T  2498 ag 2499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 3 - 202
Target Start/End: Original strand, 22084234 - 22084433
Alignment:
Q  3 tttgtttttcttcgattttttctgcacagtgtgaaaagcaaggatcagttcaggacgtagagtgtcaagatcaatacgatcggattggtgcttaaaatag 102  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||| ||| |||| |||||||||||||||||||||||||||    
T  22084234 tttgtttttcttcgattttctctgcacagtgtgaaaagcaaggatcagttcaggaagtaaagtatcaggatctatacgatcggattggtgcttaaaatag 22084333  T
Q  103 cactatcaccatcgataaaacacttctgtgcatgcaaaagatgaagtaaatggcttgggttcaaaaataagcttttgccattaaacccgacgcagggtag 202  Q
    ||||  ||||||||||| |||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||| | || | ||||||| |||||||    
T  22084334 cactgccaccatcgatagaacacttccgtgcatgcaaaagatgaagtaaatggtttgggttcgaaaataagcttttgtcgttgagcccgacgaagggtag 22084433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 41371021 - 41370825
Alignment:
Q  1 cctttgtttttcttcgattttttctgcacagtgtgaaaagcaaggatcagttcaggacgtagagtgtcaagatcaatacgatcggattggtgcttaaaat 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||  ||| |||| |  ||||||||||||||||||||||    
T  41371021 cctttgtttttcttcgattttttctgcacaatgtgaaaagcaagaatcagttcaggaagtagagaatcaggatctacgcgatcggattggtgcttaaaat 41370922  T
Q  101 agcactatcaccatcgataaaacacttctgtgcatgcaaaagatgaagtaaatggcttgggttcaaaaataagcttttgccattaaacccgacgcag 197  Q
    ||||||  ||||||| ||| |||||||| ||||||||| |||||||||||||||| |||||||| ||||| |||||||||| || | ||||||||||    
T  41370921 agcactgccaccatccatagaacacttcagtgcatgcataagatgaagtaaatggtttgggttcgaaaatcagcttttgccgttgagcccgacgcag 41370825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 181
Target Start/End: Complemental strand, 22796835 - 22796659
Alignment:
Q  5 tgtttttcttcgattttttctgcacagtgtgaaaagcaaggatcagttcaggacgtagagtgtcaagatcaatacgatcggattggtgcttaaaatagca 104  Q
    ||||||||||||||||  ||||||||   ||||||| ||| |||| ||||||| | ||||| | | |||| |||||||||| |||| |||| ||||||||    
T  22796835 tgtttttcttcgatttcctctgcacaacatgaaaagaaagaatcaattcaggaagcagagtattaggatctatacgatcggtttggcgcttgaaatagca 22796736  T
Q  105 ctatcaccatcgataaaacacttctgtgcatgcaaaagatgaagtaaatggcttgggttcaaaaataagcttttgcc 181  Q
    ||  ||||||||||| ||   || ||||||||||||||||||| || ||||||| ||||| ||||||||||||||||    
T  22796735 ctgccaccatcgatataatgtttatgtgcatgcaaaagatgaaatatatggcttcggttcgaaaataagcttttgcc 22796659  T

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Target: chr1; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 21308473 - 21308653
Alignment:
Q  1 cctttgtttttcttcgattttttctgcacagtgtgaaaagcaaggatcagttcaggacgtagagtgtcaagatcaatacgatcggattggtgcttaaaat 100  Q
    |||||||||||||||||||| ||||||||||  ||||||||||| |||||||||||| | ||||| ||| |||| || |||| || |||  |||| || |    
T  21308473 cctttgtttttcttcgatttcttctgcacagcatgaaaagcaagaatcagttcaggaagcagagtatcaggatctatgcgattggcttgacgcttgaagt 21308572  T
Q  101 agcactatcaccatcgataaaacacttctgtgcatgcaaaagatgaagtaaatggcttgggttcaaaaataagcttttgcc 181  Q
    ||   |  ||||||||||| ||   ||||||||||||||||| ||||  ||| ||||| || || |||||||| |||||||    
T  21308573 agtgttgccaccatcgatagaatgtttctgtgcatgcaaaagttgaaacaaagggctttggctcgaaaataagtttttgcc 21308653  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 22687079 - 22687023
Alignment:
Q  1 cctttgtttttcttcgattttttctgcacagtgtgaaaagcaaggatcagttcagga 57  Q
    |||||||||||||||||||| ||| ||||||  ||||||||||| ||||||||||||    
T  22687079 cctttgtttttcttcgatttcttcagcacagcatgaaaagcaagaatcagttcagga 22687023  T

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Target: scaffold0101 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 3 - 198
Target Start/End: Complemental strand, 48569 - 48374
Alignment:
Q  3 tttgtttttcttcgattttttctgcacagtgtgaaaagcaaggatcagttcaggacgtagagtgtcaagatcaatacgatcggattggtgcttaaaatag 102  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||| ||| | | |||| |||||||||||||||||||||||||||    
T  48569 tttgtttttcttcgattttctctgcacagtgtgaaaagcaaggattagttcaggaagtatagtattaggatctatacgatcggattggtgcttaaaatag 48470  T
Q  103 cactatcaccatcgataaaacacttctgtgcatgcaaaagatgaagtaaatggcttgggttcaaaaataagcttttgccattaaacccgacgcagg 198  Q
    ||||  ||||||||||| |||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||| || | |||||||||||    
T  48469 cactgccaccatcgatagaacacttccgtgcatgcaaaagatgaagtaaatggtttgggttcgaaaataagcttttgccgttgagcccgacgcagg 48374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 9e-60; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 1733078 - 1733258
Alignment:
Q  1 cctttgtttttcttcgattttttctgcacagtgtgaaaagcaaggatcagttcaggacgtagagtgtcaagatcaatacgatcggattggtgcttaaaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||  ||| |||| |  ||||||||||||||||||||||    
T  1733078 cctttgtttttcttcgattttttctgcacagtgtgaaaagcaagaatcagttcaggaagtagagaatcaggatctacgcgatcggattggtgcttaaaat 1733177  T
Q  101 agcactatcaccatcgataaaacacttctgtgcatgcaaaagatgaagtaaatggcttgggttcaaaaataagcttttgcc 181  Q
    ||||||  ||||||||||| |||||||| ||||||||| |||||||||||||||| |||||||| ||||| ||||||||||    
T  1733178 agcactgccaccatcgatagaacacttcagtgcatgcataagatgaagtaaatggtttgggttcgaaaatcagcttttgcc 1733258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 5 - 170
Target Start/End: Complemental strand, 22335738 - 22335573
Alignment:
Q  5 tgtttttcttcgattttttctgcacagtgtgaaaagcaaggatcagttcaggacgtagagtgtcaagatcaatacgatcggattggtgcttaaaatagca 104  Q
    ||||||||||||||||  |||||||||  ||||||||||| |||| ||| ||| | ||||| ||  |||| |||||||||| |||| |||| ||||||||    
T  22335738 tgtttttcttcgatttcctctgcacagcatgaaaagcaagaatcaattcgggaagcagagtatcgggatctatacgatcggtttggcgcttgaaatagca 22335639  T
Q  105 ctatcaccatcgataaaacacttctgtgcatgcaaaagatgaagtaaatggcttgggttcaaaaat 170  Q
    ||  ||| ||||||| ||   |||||||||||||||||||||| || ||||||| ||||| |||||    
T  22335638 ctgccactatcgatagaatgtttctgtgcatgcaaaagatgaaatatatggcttcggttcgaaaat 22335573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 113; Significance: 2e-57; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 3 - 194
Target Start/End: Complemental strand, 14685517 - 14685325
Alignment:
Q  3 tttgtttttcttcg-attttttctgcacagtgtgaaaagcaaggatcagttcaggacgtagagtgtcaagatcaatacgatcggattggtgcttaaaata 101  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||  ||| |||| | ||||||| ||||||||||||||||    
T  14685517 tttgtttttcttcgtattttttctgcacagtgtgaaaagcaaggatcagttcaggaagtagagaatcaggatctacacgatcgaattggtgcttaaaata 14685418  T
Q  102 gcactatcaccatcgataaaacacttctgtgcatgcaaaagatgaagtaaatggcttgggttcaaaaataagcttttgccattaaacccgacg 194  Q
    |||||  ||||||||||| |||||||||||||||||| |||||||||||||||| |||||||| ||||  |||||||||| || | |||||||    
T  14685417 gcactgccaccatcgatagaacacttctgtgcatgcataagatgaagtaaatggtttgggttcgaaaaccagcttttgccgttgagcccgacg 14685325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 10790271 - 10790451
Alignment:
Q  1 cctttgtttttcttcgattttttctgcacagtgtgaaaagcaaggatcagttcaggacgtagagtgtcaagatcaatacgatcggattggtgcttaaaat 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||  ||| |||| |  ||||||||||||||||||||||    
T  10790271 cctttgtttttcttcgattttttctgcacagtatgaaaagcaagaatcagttcaggaagtagagaatcaggatctacgcgatcggattggtgcttaaaat 10790370  T
Q  101 agcactatcaccatcgataaaacacttctgtgcatgcaaaagatgaagtaaatggcttgggttcaaaaataagcttttgcc 181  Q
    ||||||  ||||||||||| |||||||| ||||||||| |||||||||||||  | |||||||||||||| ||||||||||    
T  10790371 agcactgccaccatcgatagaacacttcagtgcatgcataagatgaagtaaacagtttgggttcaaaaatcagcttttgcc 10790451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 4 - 197
Target Start/End: Complemental strand, 7343830 - 7343637
Alignment:
Q  4 ttgtttttcttcgattttttctgcacagtgtgaaaagcaaggatcagttcaggacgtagagtgtcaagatcaatacgatcggattggtgcttaaaatagc 103  Q
    |||| |||||||||||| ||||||||||||||||||||||||||| |||||||| | || |  ||| |||| | |||||||||||||| ||| |||||||    
T  7343830 ttgtgtttcttcgatttattctgcacagtgtgaaaagcaaggatcggttcaggaagcagggaatcaggatccacacgatcggattggttcttgaaatagc 7343731  T
Q  104 actatcaccatcgataaaacacttctgtgcatgcaaaagatgaagtaaatggcttgggttcaaaaataagcttttgccattaaacccgacgcag 197  Q
    |||  |||||||||||||||| ||| ||||||||| |||||||||||||||| |||||||| ||||  |||||||||| || | ||||||||||    
T  7343730 actgccaccatcgataaaacaattccgtgcatgcataagatgaagtaaatggtttgggttcgaaaaccagcttttgccgttgagcccgacgcag 7343637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 10168942 - 10169143
Alignment:
Q  1 cctttgtttttcttcgattttttctgcacagtgtgaaaagcaaggatcagttcaggacgtagagtgtcaagatcaatacgatcggattggtgcttaaaat 100  Q
    ||||||||||||||||||||  |||||||||| |||||||||||||||| ||||||| | | |||  || |||| |||||||||| |||| |||| ||||    
T  10168942 cctttgtttttcttcgatttcctctgcacagtatgaaaagcaaggatcaattcaggaagcaaagtaacaggatctatacgatcggtttggcgcttgaaat 10169041  T
Q  101 agcactatcaccatcgataaaacacttctgtgcatgcaaaagatgaagtaaatggcttgggttcaaaaataagcttttgccattaaacccgacgcagggt 200  Q
    ||||||  ||||||||||| ||   |||| |||||||||||||||| ||| |||||||  |||| ||||||||||||||||  | | ||||||||| |||    
T  10169042 agcactgccaccatcgatagaatgtttctatgcatgcaaaagatgatgtatatggctttagttcgaaaataagcttttgccgctgagcccgacgcaaggt 10169141  T
Q  201 ag 202  Q
    ||    
T  10169142 ag 10169143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 2 - 180
Target Start/End: Complemental strand, 12847037 - 12846859
Alignment:
Q  2 ctttgtttttcttcgattttttctgcacagtgtgaaaagcaaggatcagttcaggacgtagagtgtcaagatcaatacgatcggattggtgcttaaaata 101  Q
    |||||||||||||||||||  ||||||||   ||||||||||| ||||||| |||| | ||||| ||| |||| || |||| ||||||  |||| || ||    
T  12847037 ctttgtttttcttcgatttcctctgcacaacatgaaaagcaagtatcagttgaggaagcagagtatcaggatctattcgattggattgacgcttgaagta 12846938  T
Q  102 gcactatcaccatcgataaaacacttctgtgcatgcaaaagatgaagtaaatggcttgggttcaaaaataagcttttgc 180  Q
    ||  |  ||||||||||| ||   ||||||||||||||||||||||  ||| ||||| || || ||||| |||||||||    
T  12846937 gcgttgccaccatcgatagaatgtttctgtgcatgcaaaagatgaaacaaaaggctttggctcgaaaatgagcttttgc 12846859  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 134603 - 134547
Alignment:
Q  1 cctttgtttttcttcgattttttctgcacagtgtgaaaagcaaggatcagttcagga 57  Q
    |||||||| ||||||||||||||||||||||| ||||||||||| ||||||| ||||    
T  134603 cctttgttcttcttcgattttttctgcacagtatgaaaagcaagtatcagttgagga 134547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 13040408 - 13040587
Alignment:
Q  1 cctttgtttttcttcgattttttctgcacagtgtgaaaagcaaggatcagttcaggacgtagagtgtcaagatcaatacgatcggattggtgcttaaaat 100  Q
    ||||||||||||||||||||  ||| ||||   ||||||||||| ||||||| |||| | ||||| ||| |||| || |||| ||||||  |||| || |    
T  13040408 cctttgtttttcttcgatttcctctacacaacatgaaaagcaagaatcagttgaggaagcagagtatcaggatctattcgattggattgacgcttgaagt 13040507  T
Q  101 agcactatcaccatcgataaaacacttctgtgcatgcaaaagatgaagtaaatggcttgggttcaaaaataagcttttgc 180  Q
    |||  |  ||||||||||| ||   ||||||||||||||||| ||||  ||| ||||| || || ||||| || ||||||    
T  13040508 agcgttgccaccatcgatagaatgtttctgtgcatgcaaaagttgaaacaaaaggctttggctcgaaaatgagtttttgc 13040587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 13048485 - 13048664
Alignment:
Q  1 cctttgtttttcttcgattttttctgcacagtgtgaaaagcaaggatcagttcaggacgtagagtgtcaagatcaatacgatcggattggtgcttaaaat 100  Q
    ||||||||||||||||||||  ||| ||||   ||||||||||| ||||||| |||| | ||||| ||| |||| || |||| ||||||  |||| || |    
T  13048485 cctttgtttttcttcgatttcctctacacaacatgaaaagcaagaatcagttgaggaagcagagtatcaggatctattcgattggattgacgcttgaagt 13048584  T
Q  101 agcactatcaccatcgataaaacacttctgtgcatgcaaaagatgaagtaaatggcttgggttcaaaaataagcttttgc 180  Q
    |||  |  ||||||||||| ||   ||||||||||||||||| ||||  ||| ||||| || || ||||| || ||||||    
T  13048585 agcgttgccaccatcgatagaatgtttctgtgcatgcaaaagttgaaacaaaaggctttggctcgaaaatgagtttttgc 13048664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 12023894 - 12023830
Alignment:
Q  1 cctttgtttttcttcgattttttctgcacagtgtgaaaagcaaggatcagttcaggacgtagagt 65  Q
    |||||||||||||  |||||  |||||||||  || |||||||| |||||||||||| |||||||    
T  12023894 cctttgtttttctatgatttcctctgcacagcatggaaagcaagaatcagttcaggaagtagagt 12023830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 109; Significance: 5e-55; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 14326083 - 14325887
Alignment:
Q  1 cctttgtttttcttcgattttttctgcacagtgtgaaaagcaaggatcagttcaggacgtagagtgtcaagatcaatacgatcggattggtgcttaaaat 100  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||  ||| |||| | |||||||||||||||||| ||||    
T  14326083 cctttgtgtttcttcgatttattctgcacagtgtgaaaagcaaggatcagttcaggaagtagagaatcaggatccacacgatcggattggtgcttgaaat 14325984  T
Q  101 agcactatcaccatcgataaaacacttctgtgcatgcaaaagatgaagtaaatggcttgggttcaaaaataagcttttgccattaaacccgacgcag 197  Q
    ||||||  ||||||||||| |||||||  ||||||||| |||||||||||||||| |||||||| ||||  |||||||||| || | ||||||||||    
T  14325983 agcactgccaccatcgatagaacactttcgtgcatgcataagatgaagtaaatggtttgggttcgaaaaccagcttttgccgttgagcccgacgcag 14325887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 34 - 202
Target Start/End: Complemental strand, 18161776 - 18161608
Alignment:
Q  34 tgaaaagcaaggatcagttcaggacgtagagtgtcaagatcaatacgatcggattggtgcttaaaatagcactatcaccatcgataaaacacttctgtgc 133  Q
    |||||||||||||||| ||||||| | ||||| ||| |||| |||||||||| |||| |||| ||||||||||  ||||||||||| ||   ||| ||||    
T  18161776 tgaaaagcaaggatcaattcaggaagcagagtatcaggatctatacgatcggtttggcgcttgaaatagcactgccaccatcgatagaatgtttccgtgc 18161677  T
Q  134 atgcaaaagatgaagtaaatggcttgggttcaaaaataagcttttgccattaaacccgacgcagggtag 202  Q
    ||||||||||||||||| ||| |||||||||||||| ||||||||||| || | ||||||||| |||||    
T  18161676 atgcaaaagatgaagtatatgacttgggttcaaaaaaaagcttttgccgttgagcccgacgcaaggtag 18161608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 13348841 - 13348790
Alignment:
Q  1 cctttgtttttcttcgattttttctgcacagtgtgaaaagcaaggatcagtt 52  Q
    |||||||| ||||||||||||||||||||||| ||||||| ||| |||||||    
T  13348841 cctttgttcttcttcgattttttctgcacagtatgaaaagaaagtatcagtt 13348790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 109; Significance: 5e-55; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 16312654 - 16312458
Alignment:
Q  1 cctttgtttttcttcgattttttctgcacagtgtgaaaagcaaggatcagttcaggacgtagagtgtcaagatcaatacgatcggattggtgcttaaaat 100  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||  ||| |||| | |||||||||||||||||| ||||    
T  16312654 cctttgtgtttcttcgatttattctgcacagtgtgaaaagcaaggatcagttcaggaagtagagaatcaggatccacacgatcggattggtgcttgaaat 16312555  T
Q  101 agcactatcaccatcgataaaacacttctgtgcatgcaaaagatgaagtaaatggcttgggttcaaaaataagcttttgccattaaacccgacgcag 197  Q
    ||||||  ||||||||||| |||||||  ||||||||| |||||||||||||||| |||||||| ||||  |||||||||| || | ||||||||||    
T  16312554 agcactgccaccatcgatagaacactttcgtgcatgcataagatgaagtaaatggtttgggttcgaaaaccagcttttgccgttgagcccgacgcag 16312458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 5 - 202
Target Start/End: Original strand, 23494329 - 23494526
Alignment:
Q  5 tgtttttcttcgattttttctgcacagtgtgaaaagcaaggatcagttcaggacgtagagtgtcaagatcaatacgatcggattggtgcttaaaatagca 104  Q
    |||||||||||||||||||||||||| | |||||||||||||||| ||| ||| | ||||| ||| |||| |||||||||| |||| |||| ||||||||    
T  23494329 tgtttttcttcgattttttctgcacaatatgaaaagcaaggatcaattcgggaagcagagtatcaggatctatacgatcggtttggcgcttgaaatagca 23494428  T
Q  105 ctatcaccatcgataaaacacttctgtgcatgcaaaagatgaagtaaatggcttgggttcaaaaataagcttttgccattaaacccgacgcagggtag 202  Q
    ||  ||||||||||| ||   ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| || | ||||||||| |||||    
T  23494429 ctgccaccatcgatagaatgtttccgtgcatgcaaaagatgaagtatatggcttgggttcaaaaataagcttttgccgttgagcccgacgcaaggtag 23494526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 7 - 202
Target Start/End: Complemental strand, 19027737 - 19027542
Alignment:
Q  7 tttttcttcgattttttctgcacagtgtgaaaagcaaggatcagttcaggacgtagagtgtcaagatcaatacgatcggattggtgcttaaaatagcact 106  Q
    ||||||||||||||  |||||||||| |||||||||||||||| ||||||| | ||||| ||| |||| |||||||||| ||||||||| || |||||||    
T  19027737 tttttcttcgatttcctctgcacagtatgaaaagcaaggatcaattcaggaagcagagtatcaggatctatacgatcggtttggtgcttgaattagcact 19027638  T
Q  107 atcaccatcgataaaacacttctgtgcatgcaaaagatgaagtaaatggcttgggttcaaaaataagcttttgccattaaacccgacgcagggtag 202  Q
      ||||||||||| ||   ||||||||||||||||||||||||| ||||||| ||||| ||||| ||||||||||  | | ||||||||| |||||    
T  19027637 gccaccatcgatagaatgtttctgtgcatgcaaaagatgaagtatatggcttcggttcgaaaatgagcttttgccgctgagcccgacgcaaggtag 19027542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0253 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: scaffold0253
Description:

Target: scaffold0253; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 25551 - 25355
Alignment:
Q  1 cctttgtttttcttcgattttttctgcacagtgtgaaaagcaaggatcagttcaggacgtagagtgtcaagatcaatacgatcggattggtgcttaaaat 100  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||    ||| |||| | |||||||||||||||||| ||||    
T  25551 cctttgtgtttcttcgatttattctgcacagtgtgaaaagcaaggatcagttcaggaagtaggcaatcaggatccacacgatcggattggtgcttgaaat 25452  T
Q  101 agcactatcaccatcgataaaacacttctgtgcatgcaaaagatgaagtaaatggcttgggttcaaaaataagcttttgccattaaacccgacgcag 197  Q
    ||||||  ||||||||||| |||||||| ||||||||| |||||||||||||||| |||||||| ||||  |||||||||| || | ||||||||||    
T  25451 agcactgccaccatcgatagaacacttccgtgcatgcataagatgaagtaaatggtttgggttcgaaaaccagcttttgccgttgagcccgacgcag 25355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 77565 - 77766
Alignment:
Q  1 cctttgtttttcttcgattttttctgcacagtgtgaaaagcaaggatcagttcaggacgtagagtgtcaagatcaatacgatcggattggtgcttaaaat 100  Q
    |||||||||||||||||||||||||  |||||||||||| |||| |||| ||||||| | | ||||||| |||| |||| || ||| ||| |||||||||    
T  77565 cctttgtttttcttcgattttttctagacagtgtgaaaatcaagaatcatttcaggaagcaaagtgtcaggatctatacaattggagtggcgcttaaaat 77664  T
Q  101 agcactatcaccatcgataaaacacttctgtgcatgcaaaagatgaagtaaatggcttgggttcaaaaataagcttttgccattaaacccgacgcagggt 200  Q
    ||||||   |||||||||| ||  |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| || | |||||||||||||    
T  77665 agcactgcaaccatcgatagaatgcttccgtgcatgcaaaagatgaagtaaatggtttgggttcaaaaataagcttttgccgttgagcccgacgcagggt 77764  T
Q  201 ag 202  Q
    ||    
T  77765 ag 77766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 5 - 202
Target Start/End: Original strand, 22646330 - 22646527
Alignment:
Q  5 tgtttttcttcgattttttctgcacagtgtgaaaagcaaggatcagttcaggacgtagagtgtcaagatcaatacgatcggattggtgcttaaaatagca 104  Q
    |||||||||||||||||||||||| ||| |||||| ||||||||| ||||||| | ||||| ||| |||| |||||||||| |||| |||| ||||||||    
T  22646330 tgtttttcttcgattttttctgcatagtatgaaaaacaaggatcaattcaggaagcagagtatcaggatctatacgatcggtttggcgcttgaaatagca 22646429  T
Q  105 ctatcaccatcgataaaacacttctgtgcatgcaaaagatgaagtaaatggcttgggttcaaaaataagcttttgccattaaacccgacgcagggtag 202  Q
     |  ||||||||||| ||   ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| || | ||||||||| |||||    
T  22646430 ttgccaccatcgatagaatgtttccgtgcatgcaaaagatgaagtatatggcttgggttcaaaaataagcttttgccgttgagcccgacgcaaggtag 22646527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 5 - 202
Target Start/End: Complemental strand, 23618514 - 23618317
Alignment:
Q  5 tgtttttcttcgattttttctgcacagtgtgaaaagcaaggatcagttcaggacgtagagtgtcaagatcaatacgatcggattggtgcttaaaatagca 104  Q
    ||||||||||||||||| |||||||||| |||||||||||||||| ||||||| | ||||| ||| |||| |||||||||| |||| |||| ||||||||    
T  23618514 tgtttttcttcgattttctctgcacagtatgaaaagcaaggatcaattcaggaagcagagtatcaggatctatacgatcggtttggcgcttgaaatagca 23618415  T
Q  105 ctatcaccatcgataaaacacttctgtgcatgcaaaagatgaagtaaatggcttgggttcaaaaataagcttttgccattaaacccgacgcagggtag 202  Q
    ||  ||||||||||| ||   ||  ||||||||||||||||||||  |||||||| ||||||||||||||||||||| || | ||||||||| |||||    
T  23618414 ctgccaccatcgatagaatgttttcgtgcatgcaaaagatgaagtgtatggcttgagttcaaaaataagcttttgccgttgagcccgacgcaaggtag 23618317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 5 - 180
Target Start/End: Complemental strand, 23192908 - 23192733
Alignment:
Q  5 tgtttttcttcgattttttctgcacagtgtgaaaagcaaggatcagttcaggacgtagagtgtcaagatcaatacgatcggattggtgcttaaaatagca 104  Q
    ||||||||||||||||  | |||||||| |||||||||||||||| ||||||| | ||||| ||| |||  |||||||||| ||||||||| ||||||||    
T  23192908 tgtttttcttcgatttcctttgcacagtatgaaaagcaaggatcaattcaggaagcagagtatcaggattcatacgatcggtttggtgcttgaaatagca 23192809  T
Q  105 ctatcaccatcgataaaacacttctgtgcatgcaaaagatgaagtaaatggcttgggttcaaaaataagcttttgc 180  Q
    ||  ||||||||||||||   ||||||||||||||||||||| ||  ||||||| |||||||||||||||||||||    
T  23192808 ctgccaccatcgataaaatgtttctgtgcatgcaaaagatgaggtgtatggctttggttcaaaaataagcttttgc 23192733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 24957784 - 24957845
Alignment:
Q  1 cctttgtttttcttcgattttttctgcacagtgtgaaaagcaaggatcagttcaggacgtag 62  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  24957784 cctttgtgtttcttcgatttattctgcacagtgtgaaaagcaaggatcagttcaggaagtag 24957845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 23804819 - 23804763
Alignment:
Q  1 cctttgtttttcttcgattttttctgcacagtgtgaaaagcaaggatcagttcagga 57  Q
    |||||||| ||||||||||||||||||||||  ||||||||||| ||||||| ||||    
T  23804819 cctttgttcttcttcgattttttctgcacagcatgaaaagcaagtatcagttgagga 23804763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 5 - 202
Target Start/End: Original strand, 39120 - 39317
Alignment:
Q  5 tgtttttcttcgattttttctgcacagtgtgaaaagcaaggatcagttcaggacgtagagtgtcaagatcaatacgatcggattggtgcttaaaatagca 104  Q
    ||||||||||||||||  |||||||||| |||||||||||||||| ||||||| | ||||| ||| |||| |||||||||| |||| |||| ||||||||    
T  39120 tgtttttcttcgatttcctctgcacagtatgaaaagcaaggatcaattcaggaagcagagtatcaggatctatacgatcggtttggagcttgaaatagca 39219  T
Q  105 ctatcaccatcgataaaacacttctgtgcatgcaaaagatgaagtaaatggcttgggttcaaaaataagcttttgccattaaacccgacgcagggtag 202  Q
    ||  ||||||||||| ||   || |||||||||||||||||||||| ||||||| |||||||||||||  |||||||  | | ||||||||| |||||    
T  39220 ctgccaccatcgatagaatgtttatgtgcatgcaaaagatgaagtatatggcttaggttcaaaaataaaattttgccgatgagcccgacgcaaggtag 39317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 5 - 202
Target Start/End: Original strand, 31695 - 31892
Alignment:
Q  5 tgtttttcttcgattttttctgcacagtgtgaaaagcaaggatcagttcaggacgtagagtgtcaagatcaatacgatcggattggtgcttaaaatagca 104  Q
    |||||||||| |||||  ||| |||||| ||||||||||| |||| ||||||| | ||||| ||| |||| |||||||||| ||||||||| ||||||||    
T  31695 tgtttttctttgatttcctctacacagtatgaaaagcaagaatcaattcaggaagcagagtatcaggatctatacgatcggtttggtgcttgaaatagca 31794  T
Q  105 ctatcaccatcgataaaacacttctgtgcatgcaaaagatgaagtaaatggcttgggttcaaaaataagcttttgccattaaacccgacgcagggtag 202  Q
    ||  ||||||||||| ||   || |||||||||||||||||||||| ||||||| ||||||||||||||||||||||  | | ||||||||| |||||    
T  31795 ctgccaccatcgatagaatgtttttgtgcatgcaaaagatgaagtatatggctttggttcaaaaataagcttttgccgctgagcccgacgcaaggtag 31892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 5 - 202
Target Start/End: Complemental strand, 13279577 - 13279380
Alignment:
Q  5 tgtttttcttcgattttttctgcacagtgtgaaaagcaaggatcagttcaggacgtagagtgtcaagatcaatacgatcggattggtgcttaaaatagca 104  Q
    ||||||||||||||||  |||||||||| |||||||||||||||| ||||||| | ||||| ||| |||| |||||||||| |||| |||  ||||||||    
T  13279577 tgtttttcttcgatttcctctgcacagtatgaaaagcaaggatcaattcaggaagcagagtatcaggatctatacgatcggtttggcgctcgaaatagca 13279478  T
Q  105 ctatcaccatcgataaaacacttctgtgcatgcaaaagatgaagtaaatggcttgggttcaaaaataagcttttgccattaaacccgacgcagggtag 202  Q
    ||  ||||||||||| ||   |||||| ||||||||||||||| || ||||||| ||||| |||||||||||||||| || | ||||||||| |||||    
T  13279477 ctgccaccatcgatagaatgtttctgtacatgcaaaagatgaaatatatggctttggttcgaaaataagcttttgccgttgagcccgacgcaaggtag 13279380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 5 - 202
Target Start/End: Complemental strand, 14559241 - 14559044
Alignment:
Q  5 tgtttttcttcgattttttctgcacagtgtgaaaagcaaggatcagttcaggacgtagagtgtcaagatcaatacgatcggattggtgcttaaaatagca 104  Q
    ||||||||||||||||  |||||||||| |||||||||||||||| ||||||| | ||||| ||| |||| |||||||||| |||||| || || |||||    
T  14559241 tgtttttcttcgatttcctctgcacagtatgaaaagcaaggatcaattcaggaagcagagtatcaggatctatacgatcggtttggtgtttgaagtagca 14559142  T
Q  105 ctatcaccatcgataaaacacttctgtgcatgcaaaagatgaagtaaatggcttgggttcaaaaataagcttttgccattaaacccgacgcagggtag 202  Q
    ||  ||||||||||| ||   |||||| |||||||||||||||||| ||||||| ||||| ||||| ||||||||||  | | ||||||||| |||||    
T  14559141 ctgccaccatcgatagaatgtttctgtacatgcaaaagatgaagtatatggctttggttcgaaaatgagcttttgccgctgagcccgacgcaaggtag 14559044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 5 - 202
Target Start/End: Complemental strand, 14716490 - 14716293
Alignment:
Q  5 tgtttttcttcgattttttctgcacagtgtgaaaagcaaggatcagttcaggacgtagagtgtcaagatcaatacgatcggattggtgcttaaaatagca 104  Q
    ||||||||||||||||  |||||||||  ||||||||||| |||||||| ||| | ||||| ||| |||| |||||||||| |||| |||| |||||||     
T  14716490 tgtttttcttcgatttcctctgcacagcatgaaaagcaagaatcagttcgggaagcagagtatcaggatctatacgatcggtttggcgcttgaaatagcg 14716391  T
Q  105 ctatcaccatcgataaaacacttctgtgcatgcaaaagatgaagtaaatggcttgggttcaaaaataagcttttgccattaaacccgacgcagggtag 202  Q
    ||  ||||||||||| ||   |||||||||||||||||||||| || ||||||| ||||| ||||| ||||||||||  | | ||||||||| |||||    
T  14716390 ctgccaccatcgatagaatgtttctgtgcatgcaaaagatgaaatatatggcttcggttcgaaaatgagcttttgccgctgagcccgacgcaaggtag 14716293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 5 - 202
Target Start/End: Complemental strand, 29704 - 29507
Alignment:
Q  5 tgtttttcttcgattttttctgcacagtgtgaaaagcaaggatcagttcaggacgtagagtgtcaagatcaatacgatcggattggtgcttaaaatagca 104  Q
    ||||||||||| ||||  |||||||||| ||||||||||| |||| ||||||| | ||||| ||| |||  |||||||||| ||||||||||||||||||    
T  29704 tgtttttcttctatttcctctgcacagtatgaaaagcaagaatcaattcaggaagcagagtatcaggattcatacgatcggtttggtgcttaaaatagca 29605  T
Q  105 ctatcaccatcgataaaacacttctgtgcatgcaaaagatgaagtaaatggcttgggttcaaaaataagcttttgccattaaacccgacgcagggtag 202  Q
    ||  |||||||||| |||   ||||||||||||||||||||||  | |||| |||||||| |||||||||||||||  || | ||||||| |||||||    
T  29604 ctgccaccatcgatgaaatgtttctgtgcatgcaaaagatgaatcatatggtttgggttcgaaaataagcttttgctgttgagcccgacgtagggtag 29507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 5 - 202
Target Start/End: Complemental strand, 41695 - 41498
Alignment:
Q  5 tgtttttcttcgattttttctgcacagtgtgaaaagcaaggatcagttcaggacgtagagtgtcaagatcaatacgatcggattggtgcttaaaatagca 104  Q
    ||||||||||| ||||  |||||||||| ||||||||||| |||| ||||||| | ||||| ||| |||  |||||||||| ||||||||||||||||||    
T  41695 tgtttttcttctatttcctctgcacagtatgaaaagcaagaatcaattcaggaagcagagtatcaggattcatacgatcggtttggtgcttaaaatagca 41596  T
Q  105 ctatcaccatcgataaaacacttctgtgcatgcaaaagatgaagtaaatggcttgggttcaaaaataagcttttgccattaaacccgacgcagggtag 202  Q
    ||  |||||||||| |||   ||||||||||||||||||||||  | |||| |||||||| |||||||||||||||  || | ||||||| |||||||    
T  41595 ctgccaccatcgatgaaatgtttctgtgcatgcaaaagatgaatcatatggtttgggttcgaaaataagcttttgctgttgagcccgacgtagggtag 41498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 21528081 - 21528261
Alignment:
Q  1 cctttgtttttcttcgattttttctgcacagtgtgaaaagcaaggatcagttcaggacgtagagtgtcaagatcaatacgatcggattggtgcttaaaat 100  Q
    ||||||||||||||||||||  |||||||||| ||||||||||| |||| ||||||| | | |||  || |||| ||||||||||||||| |||| ||||    
T  21528081 cctttgtttttcttcgatttcctctgcacagtatgaaaagcaagaatcaattcaggaagcaaagtaacaggatctatacgatcggattggcgcttgaaat 21528180  T
Q  101 agcactatcaccatcgataaaacacttctgtgcatgcaaaagatgaagtaaatggcttgggttcaaaaataagcttttgcc 181  Q
    ||||||  ||||||||||| ||   |||| ||||||||||||||||| || ||||||| ||||| ||||||||||||||||    
T  21528181 agcactgccaccatcgatagaatgtttctatgcatgcaaaagatgaaatatatggctttggttcgaaaataagcttttgcc 21528261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0241 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0241
Description:

Target: scaffold0241; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 5 - 202
Target Start/End: Original strand, 22866 - 23063
Alignment:
Q  5 tgtttttcttcgattttttctgcacagtgtgaaaagcaaggatcagttcaggacgtagagtgtcaagatcaatacgatcggattggtgcttaaaatagca 104  Q
    ||||||||||||||||  ||||||| || ||||||||||| |||| ||| ||| | ||||| ||| |||| |||||||||| ||| ||||| ||||||||    
T  22866 tgtttttcttcgatttcctctgcacggtatgaaaagcaagaatcaattcgggaagcagagtatcaggatctatacgatcggtttgatgcttgaaatagca 22965  T
Q  105 ctatcaccatcgataaaacacttctgtgcatgcaaaagatgaagtaaatggcttgggttcaaaaataagcttttgccattaaacccgacgcagggtag 202  Q
    ||  ||||||||||| ||   |||||||||||||||||||||| || ||||||| ||||| ||||| ||||||||||  | | ||||||||| |||||    
T  22966 ctgccaccatcgatagaatgtttctgtgcatgcaaaagatgaaatatatggcttcggttcgaaaatgagcttttgccgctgagcccgacgcaaggtag 23063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 7 - 180
Target Start/End: Original strand, 41985 - 42158
Alignment:
Q  7 tttttcttcgattttttctgcacagtgtgaaaagcaaggatcagttcaggacgtagagtgtcaagatcaatacgatcggattggtgcttaaaatagcact 106  Q
    |||||||||||||   |||||||||| ||||||||||| |||| ||||||| | ||||| ||| |||  |||||||||| ||| ||||||||||||||||    
T  41985 tttttcttcgattgcctctgcacagtatgaaaagcaagaatcaattcaggaagcagagtatcaggattcatacgatcggtttgatgcttaaaatagcact 42084  T
Q  107 atcaccatcgataaaacacttctgtgcatgcaaaagatgaagtaaatggcttgggttcaaaaataagcttttgc 180  Q
      |||||||||| |||   ||||||||||||||||||||||  | |||| |||||||| |||||||||||||||    
T  42085 gccaccatcgatgaaatgtttctgtgcatgcaaaagatgaatcatatggtttgggttcgaaaataagcttttgc 42158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0304 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0304
Description:

Target: scaffold0304; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 46 - 202
Target Start/End: Complemental strand, 8095 - 7939
Alignment:
Q  46 atcagttcaggacgtagagtgtcaagatcaatacgatcggattggtgcttaaaatagcactatcaccatcgataaaacacttctgtgcatgcaaaagatg 145  Q
    |||| ||||||| | ||||| ||| |||| |||||||||| ||||||||| ||||||||||  ||||||||||| ||   ||||||||||||||||||||    
T  8095 atcaattcaggaagcagagtatcaggatctatacgatcggtttggtgcttgaaatagcactgccaccatcgatagaatgtttctgtgcatgcaaaagatg 7996  T
Q  146 aagtaaatggcttgggttcaaaaataagcttttgccattaaacccgacgcagggtag 202  Q
    ||||| ||||||| ||||||||||||||||||||||  | | ||||||||| |||||    
T  7995 aagtatatggctttggttcaaaaataagcttttgccgctgagcccgacgcaaggtag 7939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0270
Description:

Target: scaffold0270; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 178
Target Start/End: Complemental strand, 23701 - 23528
Alignment:
Q  5 tgtttttcttcgattttttctgcacagtgtgaaaagcaaggatcagttcaggacgtagagtgtcaagatcaatacgatcggattggtgcttaaaatagca 104  Q
    ||||||||||||||||  ||||||| || |||||||||||||||| ||||||| | ||||| ||| |||| |||  ||||| ||||||||| || |||||    
T  23701 tgtttttcttcgatttcctctgcactgtatgaaaagcaaggatcaattcaggaagcagagtatcaggatctatataatcggtttggtgcttgaagtagca 23602  T
Q  105 ctatcaccatcgataaaacacttctgtgcatgcaaaagatgaagtaaatggcttgggttcaaaaataagctttt 178  Q
    ||  |||||||| ||  |   ||||||||||||||||||||||||| ||||||| ||||| |||||||||||||    
T  23601 ctgccaccatcggtaggatgtttctgtgcatgcaaaagatgaagtatatggctttggttcgaaaataagctttt 23528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 29101 - 28900
Alignment:
Q  1 cctttgtttttcttcgattttttctgcacagtgtgaaaagcaaggatcagttcaggacgtagagtgtcaagatcaatacgatcggattggtgcttaaaat 100  Q
    ||||||||||||||||||||  |||||| ||| ||||||||||| |||| || |||| | | ||| ||| |||| |||| ||||| |||| |||| ||||    
T  29101 cctttgtttttcttcgatttcctctgcatagtatgaaaagcaagaatcaatttaggaagcatagtatcaggatctatacaatcggtttggcgcttgaaat 29002  T
Q  101 agcactatcaccatcgataaaacacttctgtgcatgcaaaagatgaagtaaatggcttgggttcaaaaataagcttttgccattaaacccgacgcagggt 200  Q
    ||||||  ||||||| ||| || | ||||||||||||||||||||||  | ||||||| ||||| ||||||||||||||||  | | ||||||||| |||    
T  29001 agcactgccaccatcaatagaatatttctgtgcatgcaaaagatgaaacatatggctttggttcgaaaataagcttttgccgctgagcccgacgcaaggt 28902  T
Q  201 ag 202  Q
    ||    
T  28901 ag 28900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0130 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: scaffold0130
Description:

Target: scaffold0130; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 4 - 202
Target Start/End: Complemental strand, 39461 - 39263
Alignment:
Q  4 ttgtttttcttcgattttttctgcacagtgtgaaaagcaaggatcagttcaggacgtagagtgtcaagatcaatacgatcggattggtgcttaaaatagc 103  Q
    |||||||||||||||||  |||||||||  ||||||||||| |||||||| ||| | ||||| ||| || | |||||||| | |||| |||| |||||||    
T  39461 ttgtttttcttcgatttcctctgcacagcatgaaaagcaagaatcagttcgggaagcagagtatcatgaactatacgatcagtttggcgctttaaatagc 39362  T
Q  104 actatcaccatcgataaaacacttctgtgcatgcaaaagatgaagtaaatggcttgggttcaaaaataagcttttgccattaaacccgacgcagggtag 202  Q
    |||  ||||||||||| ||   |||||||||||||||||||||| |||| ||||| ||||| ||||| || |||||||  | | ||||||||| |||||    
T  39361 actgccaccatcgatagaatgtttctgtgcatgcaaaagatgaaataaagggcttcggttcgaaaatgagtttttgccgctgagcccgacgcaaggtag 39263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 5 - 150
Target Start/End: Original strand, 8130 - 8275
Alignment:
Q  5 tgtttttcttcgattttttctgcacagtgtgaaaagcaaggatcagttcaggacgtagagtgtcaagatcaatacgatcggattggtgcttaaaatagca 104  Q
    ||||||||||||||||  |||||||||| |||||||||||||||| ||||||| ||||||| ||| |||| |||||||||| ||||||||| || |||||    
T  8130 tgtttttcttcgatttcctctgcacagtatgaaaagcaaggatcaattcaggaagtagagtatcaggatctatacgatcggtttggtgcttgaagtagca 8229  T
Q  105 ctatcaccatcgataaaacacttctgtgcatgcaaaagatgaagta 150  Q
    ||  ||||||||||| ||   || ||||||||||||  ||||||||    
T  8230 ctgccaccatcgatagaatgtttatgtgcatgcaaagaatgaagta 8275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 181
Target Start/End: Original strand, 82817 - 82993
Alignment:
Q  5 tgtttttcttcgattttttctgcacagtgtgaaaagcaaggatcagttcaggacgtagagtgtcaagatcaatacgatcggattggtgcttaaaatagca 104  Q
    ||||||||||||||||  |||||||||  ||||||||||| |||| ||| ||| | ||||| ||| |||| |||||||||| |||| |||| |||||| |    
T  82817 tgtttttcttcgatttcctctgcacagcatgaaaagcaagaatcaattcgggaagcagagtatcaggatctatacgatcggtttggcgcttgaaatagta 82916  T
Q  105 ctatcaccatcgataaaacacttctgtgcatgcaaaagatgaagtaaatggcttgggttcaaaaataagcttttgcc 181  Q
    ||  ||||||||||| ||   || ||||||||||||||||||| || ||||||| ||||| ||||| ||||||||||    
T  82917 ctgccaccatcgatagaatgtttatgtgcatgcaaaagatgaaatatatggcttcggttcgaaaatgagcttttgcc 82993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 15532 - 15710
Alignment:
Q  1 cctttgtttttcttcgattttttctgcacagtgtgaaaagcaaggatcagttcaggacgtagagtgtcaagatcaatacgatcggattggtgcttaaaat 100  Q
    ||||||||||||||||||||| ||||||||   |||||| |||| |||||||| |||  |||||| ||  |||| |||||||||| |||| |||| ||||    
T  15532 cctttgtttttcttcgattttctctgcacaacatgaaaatcaagaatcagttcgggaattagagtatcgggatctatacgatcggcttggcgcttgaaat 15631  T
Q  101 agcactatcaccatcgataaaacacttctgtgcatgcaaaagatgaagtaaatggcttgggttcaaaaataagcttttg 179  Q
    |||  |  ||||||||||| ||   |||||||||||||||||||||| |||| ||||| || || |||||||| |||||    
T  15632 agcgttgccaccatcgatagaatgtttctgtgcatgcaaaagatgaaataaagggcttcggctcgaaaataagtttttg 15710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 153755 - 153560
Alignment:
Q  1 cctttgtttttcttcgattttttctgcacagtgtgaaaagcaaggatcagttcaggacgtagagtgtcaagatcaatacgatcggattggtgcttaaaat 100  Q
    ||||||||||||||||||||  |||||||||  ||||||||||| ||||||||| || ||||||| ||| |||| |||||||||  || | |||| ||||    
T  153755 cctttgtttttcttcgatttcctctgcacagcatgaaaagcaagaatcagttcaagaagtagagtatcaggatctatacgatcgatttagcgcttgaaat 153656  T
Q  101 agcactatcaccatcgataaaacacttctgtgcatgcaaaagatgaagtaaatggcttgggttcaaaaataagcttttgccattaaacccgacgca 196  Q
    |||| |  ||||||||||| ||   |||||||||||||||||||||| |||| ||||| || || ||||| || ||||| | || | |||||||||    
T  153655 agcattgccaccatcgatagaatgtttctgtgcatgcaaaagatgaaataaagggcttcggctcgaaaatgagtttttgtcgttgagcccgacgca 153560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0081 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 7 - 202
Target Start/End: Complemental strand, 46580 - 46385
Alignment:
Q  7 tttttcttcgattttttctgcacagtgtgaaaagcaaggatcagttcaggacgtagagtgtcaagatcaatacgatcggattggtgcttaaaatagcact 106  Q
    ||||||||||||||  |||||||| | ||||||||||| |||| ||||||| | ||||| ||| |||| || ||||||| |||| |||| ||||||||||    
T  46580 tttttcttcgatttcctctgcacaatatgaaaagcaagaatcaattcaggaagcagagtatcaggatctatgcgatcggtttggcgcttgaaatagcact 46481  T
Q  107 atcaccatcgataaaacacttctgtgcatgcaaaagatgaagtaaatggcttgggttcaaaaataagcttttgccattaaacccgacgcagggtag 202  Q
      ||||||||||| ||   ||||||||||||||| ||||||  | ||||||| ||||  ||||||| ||||||||  | | ||||||||| |||||    
T  46480 gccaccatcgatagaatgtttctgtgcatgcaaaggatgaaacatatggctttggtttgaaaataaacttttgccgctgagcccgacgcaaggtag 46385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 117694 - 117493
Alignment:
Q  1 cctttgtttttcttcgattttttctgcacagtgtgaaaagcaaggatcagttcaggacgtagagtgtcaagatcaatacgatcggattggtgcttaaaat 100  Q
    ||||||||||||||||||||  |||||||| | ||||||||||| |||| ||| ||| | | ||| ||| |||| ||||||| || |||| |||| ||||    
T  117694 cctttgtttttcttcgatttcctctgcacattatgaaaagcaagaatcaattcgggatgcatagtatcaggatctatacgattggtttggcgcttgaaat 117595  T
Q  101 agcactatcaccatcgataaaacacttctgtgcatgcaaaagatgaagtaaatggcttgggttcaaaaataagcttttgccattaaacccgacgcagggt 200  Q
    ||||||  ||||||||||| ||   || ||| ||||||||||||||| || ||||||| ||||| ||||| || |||||||  | | ||||||||| |||    
T  117594 agcactgccaccatcgatagaatgtttatgtacatgcaaaagatgaaatatatggcttcggttcgaaaatgagtttttgccgctgagcccgacgcaaggt 117495  T
Q  201 ag 202  Q
    ||    
T  117494 ag 117493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 387863 - 388064
Alignment:
Q  1 cctttgtttttcttcgattttttctgcacagtgtgaaaagcaaggatcagttcaggacgtagagtgtcaagatcaatacgatcggattggtgcttaaaat 100  Q
    ||||||||||||||||||||  ||||||||   ||||||||||| |||||||| ||| | | ||| ||| |||| |||||||||| |||| |||| ||||    
T  387863 cctttgtttttcttcgatttcctctgcacaacatgaaaagcaagaatcagttcgggaagcaaagtatcaggatctatacgatcggtttggcgcttgaaat 387962  T
Q  101 agcactatcaccatcgataaaacacttctgtgcatgcaaaagatgaagtaaatggcttgggttcaaaaataagcttttgccattaaacccgacgcagggt 200  Q
    ||||||  ||||||| ||| ||   || |||||||||| |||||||| |||| ||||| || || ||||| || ||||||| || | ||||||||| |||    
T  387963 agcactgccaccatcaatagaatgtttatgtgcatgcacaagatgaaataaagggcttcggctcgaaaatgagtttttgccgttgagcccgacgcaaggt 388062  T
Q  201 ag 202  Q
    ||    
T  388063 ag 388064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 26929 - 27124
Alignment:
Q  1 cctttgtttttcttcgattttttctgcacagtgtgaaaagcaaggatcagttcaggacgtagagtgtcaagatcaatacgatcggattggtgcttaaaat 100  Q
    ||||||||||||||||||||  |||||| ||  ||||||||||| |||||||| ||| | ||||| ||| |||| |||||||||| |||| |||| ||||    
T  26929 cctttgtttttcttcgatttcctctgcatagcatgaaaagcaagaatcagttcgggaagcagagtatcaggatctatacgatcggtttggcgcttgaaat 27028  T
Q  101 agcactatcaccatcgataaaacacttctgtgcatgcaaaagatgaagtaaatggcttgggttcaaaaataagcttttgccattaaacccgacgca 196  Q
    ||||||  |||| |||||| ||   |||| ||||||||||||| ||| |||| |||||  | || ||||| || ||||||| || | |||||||||    
T  27029 agcacttccaccgtcgatagaatgtttctatgcatgcaaaagaggaaataaagggcttcagctcgaaaatgagtttttgccgttgagcccgacgca 27124  T

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Target: scaffold0046 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 28629 - 28775
Alignment:
Q  1 cctttgtttttcttcgattttttctgcacagtgtgaaaagcaaggatcagttcaggacgtagagtgtcaagatcaatacgatcggattggtgcttaaaat 100  Q
    |||||||||||||||||||| ||||||||||  ||||||||||| |||||||||||| | ||||| ||| |||| |||||||||| |||  |||| || |    
T  28629 cctttgtttttcttcgatttcttctgcacagcatgaaaagcaagaatcagttcaggaagcagagtatcaggatctatacgatcgggttgacgcttgaagt 28728  T
Q  101 agcactatcaccatcgataaaacacttctgtgcatgcaaaagatgaa 147  Q
    |||  |  |||||| |||| ||   ||||||||||||||||||||||    
T  28729 agcgttgccaccattgatagaatgtttctgtgcatgcaaaagatgaa 28775  T

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Target: scaffold0013 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 110773 - 110919
Alignment:
Q  1 cctttgtttttcttcgattttttctgcacagtgtgaaaagcaaggatcagttcaggacgtagagtgtcaagatcaatacgatcggattggtgcttaaaat 100  Q
    ||||||||||||||||| ||| |||||| ||  ||||||||||| ||||||| |||| | ||||||||| |||| || |||| ||||||  ||||||| |    
T  110773 cctttgtttttcttcgactttctctgcatagcatgaaaagcaagtatcagttgaggaagcagagtgtcaggatctattcgattggattgacgcttaaagt 110872  T
Q  101 agcactatcaccatcgataaaacacttctgtgcatgcaaaagatgaa 147  Q
    |||  |  ||||||||| | |||  ||||||||||||||||||||||    
T  110873 agcgttgccaccatcgaaagaacgtttctgtgcatgcaaaagatgaa 110919  T

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Target: scaffold0013; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 173
Target Start/End: Original strand, 117603 - 117773
Alignment:
Q  3 tttgtttttcttcgattttttctgcacagtgtgaaaagcaaggatcagttcaggacgtagagtgtcaagatcaatacgatcggattggtgcttaaaatag 102  Q
    ||||||||||||||| ||| |||||||||  ||||||||||| ||||||| |||| | ||||||||| |||| || |||| ||||||  |||| || |||    
T  117603 tttgtttttcttcgactttctctgcacagcatgaaaagcaagtatcagttgaggaagcagagtgtcaggatctattcgattggattgacgcttgaagtag 117702  T
Q  103 cactatcaccatcgataaaacacttctgtgcatgcaaaagatgaagtaaatggcttgggttcaaaaataag 173  Q
    |  |  ||||||||| | |||  ||||||||||||||||||||||  ||| ||||| || || ||||||||    
T  117703 cgttgccaccatcgaaagaacgtttctgtgcatgcaaaagatgaaacaaaaggcttcggctcgaaaataag 117773  T

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Target: scaffold0013; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 125455 - 125627
Alignment:
Q  1 cctttgtttttcttcgattttttctgcacagtgtgaaaagcaaggatcagttcaggacgtagagtgtcaagatcaatacgatcggattggtgcttaaaat 100  Q
    ||||||||||||||||| ||| ||| ||||   ||||||||||| ||||||| |||| | ||||||||| |||| || |||| ||||||  |||| || |    
T  125455 cctttgtttttcttcgactttctctacacaacatgaaaagcaagtatcagttgaggaagcagagtgtcaggatctattcgattggattgacgcttgaagt 125554  T
Q  101 agcactatcaccatcgataaaacacttctgtgcatgcaaaagatgaagtaaatggcttgggttcaaaaataag 173  Q
    |||  |  ||||||||||| ||   || |||||||||||||||||||  ||| ||||| || || ||||||||    
T  125555 agcgttgccaccatcgatagaatgtttttgtgcatgcaaaagatgaaacaaaaggctttggctccaaaataag 125627  T

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Target: scaffold0026 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 71 - 181
Target Start/End: Complemental strand, 120583 - 120473
Alignment:
Q  71 gatcaatacgatcggattggtgcttaaaatagcactatcaccatcgataaaacacttctgtgcatgcaaaagatgaagtaaatggcttgggttcaaaaat 170  Q
    |||| |||||||||| || | |||| ||||||||||  ||||||||||| ||   |||||||||||||||||||||| |||| ||||| ||||| |||||    
T  120583 gatctatacgatcggtttagcgcttgaaatagcactgccaccatcgatagaatgtttctgtgcatgcaaaagatgaaataaagggcttcggttcgaaaat 120484  T
Q  171 aagcttttgcc 181  Q
     ||||||||||    
T  120483 gagcttttgcc 120473  T

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Target: scaffold1171 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1171
Description:

Target: scaffold1171; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 635 - 579
Alignment:
Q  1 cctttgtttttcttcgattttttctgcacagtgtgaaaagcaaggatcagttcagga 57  Q
    |||||| | ||||||||||| ||||||||||||| ||||||||| ||||||| ||||    
T  635 cctttgctcttcttcgatttgttctgcacagtgttaaaagcaagtatcagttgagga 579  T

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