View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5100-Insertion-3 (Length: 1058)
Name: NF5100-Insertion-3
Description: NF5100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5100-Insertion-3 |
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Alignment Details
Target: chr4 (Bit Score: 903; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 903; E-Value: 0
Query Start/End: Original strand, 36 - 1052
Target Start/End: Complemental strand, 2091065 - 2090053
Alignment:
| Q |
36 |
ctagattcatgcatgccttatcttttgtctactataattaaaaatattacggtcacttttattttcttagcnnnnnnnnctttgaataaagaccggatta |
135 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2091065 |
ctagattcatgcatgccttatcttttgtctactataattaaaaatattacggtcacttttattttcttagcttttttttctttgaataaagaccggatta |
2090966 |
T |
|
| Q |
136 |
tattaaatttggtcaaataggacctcaaatgaaatacacattggggttttttcttagctagattcatgcatccttatcttttgtctatgtataattaaaa |
235 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2090965 |
tattaaatttggtcaaataggacctcaaatgaaatacacattggggttttttcttagctagattcatgcatccttatcttttgtctatgtataattaaaa |
2090866 |
T |
|
| Q |
236 |
atattaccattattttaattttctaaacctaaaactattttgccatgtgtgtcgagtcatgtgtcacgctttataaaaatcagatcgtaaaacaatagag |
335 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2090865 |
atattaccattattttaattttctaaacctgaaactattttgtcgtgtgtgtcgagtcatgtgtcacgctttataaaaattagatcgtaaaacaatagag |
2090766 |
T |
|
| Q |
336 |
acatcatcacactcgcctatcattatctttatcaattcttcttgataatcataatcactctttaaatggagggtaaaatttttagaaagaagaggacaat |
435 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2090765 |
acatca---cactcgcctatcattatctttatcaattcttcttgataatcataatcactctttaaatggagggtaaaatttttagaaagaagaggacaat |
2090669 |
T |
|
| Q |
436 |
ggggataaggaagcctaaatccttattcaaccgtctccccacagagcttcaaacaaaaatctttggtgggctatctatgaaggatcaatcaaaggctatg |
535 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2090668 |
ggggataaggaagcctaaatccttattcaaccatctccccacagagcttcaaacaaaaatctttggtgggctatctatgaaggatcaatcaaaggctatg |
2090569 |
T |
|
| Q |
536 |
tgtgtctcgcactcatggcgtaatcgcattctaatcacaacacttccaaaggagtatccattacaacctttggtgtttcctcacctttcccctcacccat |
635 |
Q |
| |
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||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2090568 |
tgtgtctcgcactcatggcgtaatcgcatcctaaccacaacacttccaaaggagtatccattacaacctttggtgtttcctcacctttcccctcacccat |
2090469 |
T |
|
| Q |
636 |
tttatggcctagaacaattttttaattggtgctcattagtgatgtgttgcaatgtcagttcaagaaatattatagacacatgcaatgggttattcttgtt |
735 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2090468 |
tttatggcctacaacaattttttaattggtgctcattagtgatgtgttgcaatgtaagttcaagaaatattatagacacatgcaatgggttattcttgtt |
2090369 |
T |
|
| Q |
736 |
ttgccataaggatggtcaagctaggaatattgtgcgtggtgtctaccactactatgtcatgaatcctataagaaaacaatgtgtggctattttgaagcct |
835 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2090368 |
ttgccataaggatggtcaagctaggaatattgtgcgtggtgtctaccactactatgtcatgaatcctataagaaaacaatgtgtggctattttgaagcct |
2090269 |
T |
|
| Q |
836 |
tctggacaattttttggaggaaattcatatgctgctctggcatatgacccttcagaatcttggttctttaagattgtacatttccaagatcatggccata |
935 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||| |
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| T |
2090268 |
tctggacaattttttggaggaaattcatatgctgctctggtatatgacccttcagaatcttggttcttcaagattgtacattttcaggatcatggccata |
2090169 |
T |
|
| Q |
936 |
ttaacattttctcctctatgactggcctttggacgaccttgactatcaattttcttcaatatatcaatggagtcttactgggtcagaaaatcgatttatc |
1035 |
Q |
| |
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|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||| |
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| T |
2090168 |
ttaatattttctcctctatgaccggcctttggacgaccttgactatcaattttcttcaatatatcaat-gagtcttactgggtcaggaaatcggtttatc |
2090070 |
T |
|
| Q |
1036 |
taaaaggatctatttac |
1052 |
Q |
| |
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||||||||||||||||| |
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| T |
2090069 |
taaaaggatctatttac |
2090053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 5e-22; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 711 - 977
Target Start/End: Original strand, 2878944 - 2879210
Alignment:
| Q |
711 |
acacatgcaatgggttattcttgttttgccataaggatggtcaagctaggaatattgtgcgtggtgtctaccactactatgtcatgaatcctataagaaa |
810 |
Q |
| |
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||||||||||||| ||| | ||||||||||| || |||||| | |||| || || ||||||||||||| | ||||||||| ||||||| | | ||| |
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| T |
2878944 |
acacatgcaatggcttactattgttttgccacaatgatggtgaggctaccaacatcttgcgtggtgtctattattactatgtcctgaatccagtcacaaa |
2879043 |
T |
|
| Q |
811 |
acaatgtgtggctattttgaagccttctggacaattttttggaggaaattcatatgctgctctggcatatgacccttcagaatcttggttctttaagatt |
910 |
Q |
| |
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|||||||||| || || ||||||| |||||| | ||| || ||||||||||||||||||||||||||||| ||||||||||||| || |||||| |
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| T |
2879044 |
acaatgtgtgactgttatgaagcccataggacaaacctctggtgggtattcatatgctgctctggcatatgaccctgcagaatcttggtttttcaagatt |
2879143 |
T |
|
| Q |
911 |
gtacatttccaagatcatggccatattaacattttctcctctatgactggcctttggacgaccttga |
977 |
Q |
| |
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|| | ||| || | || | | ||| | |||||||||||||| ||||||| ||||||||| |||| |
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|
| T |
2879144 |
gtgcgttttcagggtcttcgtcatgtgaacattttctcctccgtgactggtaattggacgacattga |
2879210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 421 - 576
Target Start/End: Original strand, 2878654 - 2878809
Alignment:
| Q |
421 |
aaagaagaggacaatggggataaggaagcctaaatccttattcaaccgtctccccacagagcttcaaacaaaaatctttggtgggctatctatgaaggat |
520 |
Q |
| |
|
||||||||| || ||||||| ||||||||| | |||||| |||||| |||||||| | | ||||||| ||||| ||| || || | || || ||||| |
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| T |
2878654 |
aaagaagagaactatggggaaaaggaagcccagatccttcttcaacaatctccccataaatattcaaacgaaaatattttgtaggttgtcgttggaggat |
2878753 |
T |
|
| Q |
521 |
caatcaaaggctatgtgtgtctcgcactcatggcgtaatcgcattctaatcacaac |
576 |
Q |
| |
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|||||||| ||||||||||||||| | ||||||||||| | |||||| |||||| |
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| T |
2878754 |
caatcaaaagctatgtgtgtctcgaatgaatggcgtaatcacgttctaaacacaac |
2878809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 514 - 555
Target Start/End: Complemental strand, 2727373 - 2727332
Alignment:
| Q |
514 |
gaaggatcaatcaaaggctatgtgtgtctcgcactcatggcg |
555 |
Q |
| |
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||||||||||||||| |||||||||||||| ||||||||||| |
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|
| T |
2727373 |
gaaggatcaatcaaaagctatgtgtgtctcacactcatggcg |
2727332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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