View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5100-Insertion-5 (Length: 598)
Name: NF5100-Insertion-5
Description: NF5100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5100-Insertion-5 |
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| [»] scaffold0693 (1 HSPs) |
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Alignment Details
Target: scaffold0693 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: scaffold0693
Description:
Target: scaffold0693; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 7 - 598
Target Start/End: Original strand, 2652 - 3253
Alignment:
| Q |
7 |
actttcagagtagtacattcaatgaaacgtgtaagcaattaaacaccattaatagggattaggtagctgttgagaatattgatatatatccaccataccc |
106 |
Q |
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| T |
2652 |
actttcagagtagtacattcaatgaaacgtgtaagcaattaaacaccattaatagggattaggtagctgttgagaatattgatatatatccaccataccc |
2751 |
T |
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| Q |
107 |
gtggattaattttaaccagtaatgtagtgtcacccattttggaggcactgtatatgccatatcttacattacataaatgatctccaattggcactaaaat |
206 |
Q |
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| T |
2752 |
gtggattaattctaaccagtaatgtagtgtcacccattttggaggcactgtatatgccatatcttacattccataaatgatctccaattggcactaaaat |
2851 |
T |
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| Q |
207 |
ttagaatactagacannnnnnnnnnnnnnngaaaggatataggagtactggacaatttttatctccgaagaaatggaattccgaatggcaaaaggagaag |
306 |
Q |
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| T |
2852 |
ttagaatactagacattttttattttttttgaaaggatataggagtactg-acaatttttatctctgaagaaatggaattccgaatggcaaaaggagaag |
2950 |
T |
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| Q |
307 |
ttttgctaagagtttcagcaatattgttcttagtatcaacagcttgtatagttgcttttgatactgaaacaaaggttgtaatattaatgattaagaaaaa |
406 |
Q |
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| T |
2951 |
ttttgctaagagtttcagcaatattgttcttagtatcaacagcttgtatagttgcttttgatactgaaacaaaggttgtaatattaatgattaagaagaa |
3050 |
T |
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| Q |
407 |
agctacttacaaggacttggatgctctcaagtaaaattcttcttctttatttgtctgttctcacattttatgttgaagtatataccatgatc-------- |
498 |
Q |
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| T |
3051 |
agctacttacaaggacttggatgctctcaagtaaaattcttcttctttatttgtctgttctcacattttatgttgaaatatgtaccatgatcttgaatta |
3150 |
T |
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| Q |
499 |
---atttttgtatgnnnnnnnaggatcttgttgtatgtgacatctgcagctgctgggtataacatgcttcaattatgcaaacactctttctcagcttgtt |
595 |
Q |
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| T |
3151 |
ggaatttttgtatgtttttttaggatcttgttgtatgtgacatctgcagctgctgggtataacatgcttcaattatgcaaacactctttctcagcttgtt |
3250 |
T |
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| Q |
596 |
cta |
598 |
Q |
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| T |
3251 |
cta |
3253 |
T |
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