View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5100_high_2 (Length: 435)
Name: NF5100_high_2
Description: NF5100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5100_high_2 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 7 - 435
Target Start/End: Original strand, 16733115 - 16733543
Alignment:
| Q |
7 |
tcgaagaatatgtttagtggaaacttgagttgggaattcaacaaattgaaagagcttgaagtgttggatatttacaacaatggttttaacggttcgcttc |
106 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
16733115 |
tcgaacaatatgtttagtggaaacttgagttgggaattcaacaaattgaaagagcttgaagtgttggatatttacaacaacggttttaacggttcgcttc |
16733214 |
T |
|
| Q |
107 |
ctcgtggtgttactcaagtttcaagtctcaagcatctgaattttggagggaattacttttctggaaaaattcctacaagttatggagaaatgaaacagct |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16733215 |
ctcgtggtgttactcaagtttcaagtctcaagcatctgaattttggagggaattacttttctggaaaaattcctacaagttatggagaaatgaaacagct |
16733314 |
T |
|
| Q |
207 |
taattttttgtctcttgctggaaatgatttgagtggttttttacctagtgagcttggaaatttgactagtttggaaaatctttatttaggttatttcaat |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16733315 |
taattttttgtctcttgctggaaatgatttgagtggttttttacctagtgagcttggaaatttgactagtttggaaaatctttatttaggttatttcaat |
16733414 |
T |
|
| Q |
307 |
caatttgatggtggagttccaaaagagtttggtaagttgattaatttggttcatttagacctagcaagttgtttcttgaaaggttcaattccacttgagt |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16733415 |
caatttgatggtggagttccaaaagagtttggtaagttgattaatttggttcatttagacctagcaagttgtttcttgaaaggttcaattccacttgagt |
16733514 |
T |
|
| Q |
407 |
taggtcaacttaacaagctagatacactt |
435 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
16733515 |
taggtcaacttaacaagctagatacactt |
16733543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 267
Target Start/End: Complemental strand, 25547099 - 25547034
Alignment:
| Q |
202 |
cagcttaattttttgtctcttgctggaaatgatttgagtggttttttacctagtgagcttggaaat |
267 |
Q |
| |
|
|||||||| | |||||||||||| || ||||||||||| ||||| ||||| ||||||||||||| |
|
|
| T |
25547099 |
cagcttaactatttgtctcttgcaggtaatgatttgagaggtttcataccttttgagcttggaaat |
25547034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 267
Target Start/End: Complemental strand, 39227900 - 39227835
Alignment:
| Q |
202 |
cagcttaattttttgtctcttgctggaaatgatttgagtggttttttacctagtgagcttggaaat |
267 |
Q |
| |
|
|||||||| | |||||||||||| || ||||||||||| ||||| ||||| ||||||||||||| |
|
|
| T |
39227900 |
cagcttaactatttgtctcttgcaggtaatgatttgagaggtttcataccttttgagcttggaaat |
39227835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University