View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5100_high_4 (Length: 348)
Name: NF5100_high_4
Description: NF5100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5100_high_4 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 1e-90; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 168 - 348
Target Start/End: Original strand, 38260799 - 38260978
Alignment:
| Q |
168 |
acttatgttgctgcttcttctcatcttgatctccatgtaggcttatcatcacaatcacaagaactgccttctcaaacaattaatatttcagttgctgttg |
267 |
Q |
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| T |
38260799 |
acttatgttgctgcttcttctcatcttgatctccatgtaggcttatcatcacaatcacaagaactgccttctcaaacaattaatatttcagttgctgatg |
38260898 |
T |
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| Q |
268 |
ttggggatgttaacaagaacgatatgagaaagaagaagaagagaaatgaaaatattaatgatggaagaatccacagcctac |
348 |
Q |
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| T |
38260899 |
tt-gggatgttaacaagaacgatatgagaaagaagaagaagagaaatgaaaatattaatgatggaagaatccacagcctac |
38260978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 38260632 - 38260732
Alignment:
| Q |
1 |
ttggtagtcatgctccgggaatcctaaaagcaatggagattcttgaaactcggtttgggcatttgcatacatcaacgtcatcattttcgccatcaattaa |
100 |
Q |
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| T |
38260632 |
ttggtagtcatgctccgggaatcctaaaagcaatggagattcttgaaactcagtttgggcatttgcatacatcaacgtcatcatcgtcgtcatcaattaa |
38260731 |
T |
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| Q |
101 |
t |
101 |
Q |
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| T |
38260732 |
t |
38260732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 181 - 348
Target Start/End: Original strand, 38244511 - 38244678
Alignment:
| Q |
181 |
cttcttctcatcttgatctccatgtaggcttatcatcacaatcacaagaactgccttctcaaacaattaatatttcagttgctgttgttggggatgttaa |
280 |
Q |
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| T |
38244511 |
cttcttctcatcttgatcttcatgtaggcttatcatcacaactacaagaactgccttctcaaactatcaatttatttgttactgatgttagggatattaa |
38244610 |
T |
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| Q |
281 |
caagaacgatatgagaaagaagaagaagagaaatgaaaatattaatgatggaagaatccacagcctac |
348 |
Q |
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| T |
38244611 |
caagaatgataaaaggaagaagaagaagagcaatgaaaatatcgatgatggtaaaattcacagcctac |
38244678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 38244340 - 38244422
Alignment:
| Q |
1 |
ttggtagtcatgctccgggaatcctaaaagcaatggagattcttgaaactcggtttgggcatttgcatacatcaacgtcatca |
83 |
Q |
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| T |
38244340 |
ttggtagtcatgctccgggaatcaaaaaagcgatgcagattcttgaagctcagtttggacatctgcaaacatcaacatcatca |
38244422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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