View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5100_low_3 (Length: 356)
Name: NF5100_low_3
Description: NF5100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5100_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 19 - 319
Target Start/End: Complemental strand, 7482115 - 7481815
Alignment:
| Q |
19 |
cttcatgcacaactatagacaatcgcttaaaccttgtggaactcaaatggaaaaacttatattcacatcttctcaaaatggtatactctacataatgnnn |
118 |
Q |
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| T |
7482115 |
cttcatgcacaactatagacaatcgcttaaaccttgtggaactcaaatggaaaaacttatattcacatcttctcaaaatgatatactctacataatgttt |
7482016 |
T |
|
| Q |
119 |
nnnngttcccatagttggaaccaaagctccagatgaatctagtaatactcaggttaatgaaacaaatcatcaaaaagttgagaatgtaaaaaatgatggt |
218 |
Q |
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| T |
7482015 |
ttttgttcccatagttggaaccaaagctccagatgaatctagtaatactcaggttaatgaaacaaatcatcaaaaagttgagaatgtaaaaaatgatggt |
7481916 |
T |
|
| Q |
219 |
tgtagttctctctctaagttttacaaccaatgatcttgctgatggtttttagagactttgtggcttgattgccctaaagttggatgatcttctcatttca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7481915 |
tgtagttctctctctaagttttacaaccaatgatcttgctgatggtttttagagactttgtggcttgattgccctaaagttggatgatcttctcatttca |
7481816 |
T |
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| Q |
319 |
c |
319 |
Q |
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| T |
7481815 |
c |
7481815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 156 - 209
Target Start/End: Complemental strand, 7496109 - 7496056
Alignment:
| Q |
156 |
tctagtaatactcaggttaatgaaacaaatcatcaaaaagttgagaatgtaaaa |
209 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
7496109 |
tctaataatactcaggctaatgaaacaaatcatcaaaaagttgataatgtaaaa |
7496056 |
T |
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