View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5100_low_6 (Length: 334)
Name: NF5100_low_6
Description: NF5100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5100_low_6 |
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| [»] scaffold0618 (1 HSPs) |
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Alignment Details
Target: scaffold0618 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: scaffold0618
Description:
Target: scaffold0618; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 27 - 319
Target Start/End: Complemental strand, 7028 - 6736
Alignment:
| Q |
27 |
gcggttatacggcagttatgtattataattcctgtgttttcattcggatctgttcttccttgtgctgttacggtgttctgttggttgctcattggttttc |
126 |
Q |
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||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7028 |
gcggttatacggcagttatgtattacaattccagtgttttcatttggatctgttcttccttgtgctgttacggtgttctgttggttgctcattggttttc |
6929 |
T |
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| Q |
127 |
tgacaaagatgttgcagttttgaaggacagtaacggcattaccgaagatgaaatcgatggttccatagatgttgcagtcacggtagaattgacggttggc |
226 |
Q |
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| T |
6928 |
tgacaaagatgttgcagttttgaaggacagtaacggcgttaccgaagatgaaatcgattgttccatagatgttgcagtcacggtagaattgacggttggc |
6829 |
T |
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| Q |
227 |
gtaagcatataaggtgtcttggtaacctttgaaggcgcaacggtagaaaacagagtgatcggcgccggaacggagagctactgcttggtgttt |
319 |
Q |
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| T |
6828 |
gtaaacatataaagtgtcttggaagcctttgaaggcgcaacggtagaaaacagagtgatcggcaccggaacggagagccactgcttggtgttt |
6736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 27 - 319
Target Start/End: Complemental strand, 44087727 - 44087435
Alignment:
| Q |
27 |
gcggttatacggcagttatgtattataattcctgtgttttcattcggatctgttcttccttgtgctgttacggtgttctgttggttgctcattggttttc |
126 |
Q |
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| T |
44087727 |
gcggttatacggcagttatgtattacaattccagtgttttcatttggatctgttcttccttgtgctgttacggtgttctgttggttgctcattggttttc |
44087628 |
T |
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| Q |
127 |
tgacaaagatgttgcagttttgaaggacagtaacggcattaccgaagatgaaatcgatggttccatagatgttgcagtcacggtagaattgacggttggc |
226 |
Q |
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| T |
44087627 |
tgacaaagatgttgcagttttgaaggacagtaacggcgttaccgaagatgaaatcgattgttccatagatgttgcagtcacggtagaattgacggttggc |
44087528 |
T |
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| Q |
227 |
gtaagcatataaggtgtcttggtaacctttgaaggcgcaacggtagaaaacagagtgatcggcgccggaacggagagctactgcttggtgttt |
319 |
Q |
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| T |
44087527 |
gtaaacatataaagtgtcttggaagcctttgaaggcgcaacggtagaaaacagagtgatcggcaccggaacggagagccactgcttggtgttt |
44087435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 27 - 319
Target Start/End: Original strand, 44092883 - 44093175
Alignment:
| Q |
27 |
gcggttatacggcagttatgtattataattcctgtgttttcattcggatctgttcttccttgtgctgttacggtgttctgttggttgctcattggttttc |
126 |
Q |
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||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
44092883 |
gcggttatacggcagttatgtattacaattccagtgttttcatttggatctgttcttccttgtgctgttacggtgttcttttggttgctcattggttttc |
44092982 |
T |
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| Q |
127 |
tgacaaagatgttgcagttttgaaggacagtaacggcattaccgaagatgaaatcgatggttccatagatgttgcagtcacggtagaattgacggttggc |
226 |
Q |
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| T |
44092983 |
tgacaaagatgttgcagttttgaaggacagtaacggcgttaccgaagatgaaatcgattgttccatagatgttgcagtcacggtagaattgacggttggc |
44093082 |
T |
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| Q |
227 |
gtaagcatataaggtgtcttggtaacctttgaaggcgcaacggtagaaaacagagtgatcggcgccggaacggagagctactgcttggtgttt |
319 |
Q |
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| T |
44093083 |
gtaaacatataaagtgtcttggaagcctttgaaggcgcaacggtagaaaacagagtgatcggcaccggaacggagagccactgcttggtgttt |
44093175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 97 - 277
Target Start/End: Original strand, 44067647 - 44067827
Alignment:
| Q |
97 |
cggtgttctgttggttgctcattggttttctgacaaagatgttgcagttttgaaggacagtaacggcattaccgaagatgaaatcgatggttccatagat |
196 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
44067647 |
cggtgttctattggttgctcattggttttctgacaaagatgttgcagttttgaaggacagtaacggcgttaccgaagatgaaatcgattgttccatagat |
44067746 |
T |
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| Q |
197 |
gttgcagtcacggtagaattgacggttggcgtaagcatataaggtgtcttggtaacctttgaaggcgcaacggtagaaaac |
277 |
Q |
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| T |
44067747 |
gttgcagtcacggtagaattgacggttggcgtaagcatataaggtgtcttggtaacctttgaaggcacaacggtagaaaac |
44067827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 44067375 - 44067459
Alignment:
| Q |
20 |
atttgcagcggttatacggcagttatgtattataattcctgtgttttcattcggatctgttcttccttgtgctgttacggtgttc |
104 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44067375 |
atttgcagtggttatacggcagttatgtattataattcctgtgttttcattcggatctgttcttccttgtgctgttacggtgttc |
44067459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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