View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5101-Insertion-3 (Length: 593)
Name: NF5101-Insertion-3
Description: NF5101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5101-Insertion-3 |
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Alignment Details
Target: chr5 (Bit Score: 488; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 7 - 531
Target Start/End: Original strand, 42326932 - 42327455
Alignment:
| Q |
7 |
atctttgaccttgtggaatccattcttgaaaactccgaatccaaacagcattccgattgtgatcacaaccagaatcaagcatacgcataacatgcacact |
106 |
Q |
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| T |
42326932 |
atctttgaccttgtggaatccattcttgaaaactccgaatccaaacagcattccgattgtgatcacaaccagaatcaagcatacgcataacatgcacact |
42327031 |
T |
|
| Q |
107 |
ttgcccggacaacacatctttaatcaacgatcgtcgaagaaaaagagtttcaatannnnnnnncctcttggtatttctgatcttgtgaaaaaattgtgaa |
206 |
Q |
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| T |
42327032 |
ttgcccggacaacacatctttaatcaacgatcgtcgaagaaaaagagtttcaataatttttt-cctcttggtatttctgatcttgtgaaaaaattgtgaa |
42327130 |
T |
|
| Q |
207 |
gataatgtggtgaatttaaaagaaaatgaagaagttaacgttggtgtctttgttacagcttgattgaaacacgcgtacgcgtttttgagcttataaggta |
306 |
Q |
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| T |
42327131 |
gataatgtggtgaatttaaaagaaaatgaagaaggtaacgttggtgtctttgttacagcttgattgaaacacgcgtacgcgtttttgagcttataaggaa |
42327230 |
T |
|
| Q |
307 |
agctatttatttcatcatttgaaaacaacattccctttcttcgtaaaatacaaaacaatattccctcttaaaaggaaaaataaagatttcgttttattat |
406 |
Q |
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| T |
42327231 |
agctatttatttcatcatttgaaaacaacattccctttcttcgtaaaatacaaaacaatattccctcttaaaaggaaaaataaagatttcgttttattat |
42327330 |
T |
|
| Q |
407 |
gaacttgataataatactgatttcatttgcgtcatttactataaacccctttagaaaaaggaaatgaaaattataaatggattggaattgaatagttagt |
506 |
Q |
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| T |
42327331 |
gaacttgataataatactgatttcatttgcgtcatttactataaacccctttagaaaaaggaaatgaaaattataaatggattggaattgaatagttagt |
42327430 |
T |
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| Q |
507 |
taataaacttccttaacattttgtc |
531 |
Q |
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| T |
42327431 |
taataaacttccttaacattttgtc |
42327455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 8 - 139
Target Start/End: Original strand, 42319543 - 42319674
Alignment:
| Q |
8 |
tctttgaccttgtggaatccattcttgaaaactccgaatccaaacagcattccgattgtgatcacaaccagaatcaagcatacgcataacatgcacactt |
107 |
Q |
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|||||||| |||||||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||||| ||||||||||| ||||||| |||| | || |
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| T |
42319543 |
tctttgactttgtggaaaccattcttgaatactccgaatccaaacagaattccgatcgtgatcacaaccacaatcaagcatatgcataacgtgcagattt |
42319642 |
T |
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| Q |
108 |
tgcccggacaacacatctttaatcaacgatcg |
139 |
Q |
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| T |
42319643 |
tgcctggacaacacatctcgaatgaacgatcg |
42319674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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