View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5101-Insertion-4 (Length: 568)
Name: NF5101-Insertion-4
Description: NF5101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5101-Insertion-4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 545; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 8 - 568
Target Start/End: Complemental strand, 28036745 - 28036185
Alignment:
| Q |
8 |
agaagaacgcgatgatgaatatcttggtcttcctcctatagcagctaatgaaccaattctatgtctcatttgggaacaagttgcaattttgctttctggt |
107 |
Q |
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| T |
28036745 |
agaagaacgcgatgatgaatatcttggtcttcctcctatagcagctaatgaaccaattctctgtctcatttgggaacaagttgcaattttgctttctggt |
28036646 |
T |
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| Q |
108 |
tgttcaatagatgaacgttctgatgctgcagcttcattggtttcattggcacgtgacaatgatcgttacggaaaactaattatagaagaaggtggtgttc |
207 |
Q |
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| T |
28036645 |
tgttcaatagatgaacgttctgatgctgcagcttcattggtttcattggcacgtgacaatgatcgttacggaaaactaattatagaagaaggtggtgttc |
28036546 |
T |
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| Q |
208 |
cacctcttcttaaacttcttaaagaaggaagacttgatggacaagaaaacgctgcaagagcaattggattacttggtagagatccagaaagcgttgaaca |
307 |
Q |
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| T |
28036545 |
cacctcttcttaaacttcttaaagaaggaagacttgatggacaagaaaacgctgcaagagcaattggattacttggtagagatccagaaagtgttgaaca |
28036446 |
T |
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| Q |
308 |
tattgtgaattgtggtgtttgttcggtttttgcgaaagtactcaaagatggtcacatgaaggttcaaatagttgttgcttgggctatttcagaacttgca |
407 |
Q |
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| T |
28036445 |
tattgtgaattgtggtgtttgttcggtttttgcgaaagtactcaaagatggtcacatgaaggttcaaatagttgttgcttgggctatttcagaacttgca |
28036346 |
T |
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| Q |
408 |
gcacatcatccaaaatgtcaagatcattttgctcagaataatgctattcgtttgcttgttagtcatcttgcttttgaaaccattcaagaacatagtaagt |
507 |
Q |
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| T |
28036345 |
gcacatcatccaaaatgtcaagatcattttgctcagaataatgctattcgtttgcttgttagtcatcttgcttttgaaaccattcaagaacatagtaagt |
28036246 |
T |
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| Q |
508 |
attctattacaaacaaacaaaacatgtcctccttacattctctagttatggctagcaacac |
568 |
Q |
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| T |
28036245 |
attctattaccaacaaacaaaacatgtcctccttacattctcttgttatggctagcaacac |
28036185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 320 - 515
Target Start/End: Original strand, 8756715 - 8756910
Alignment:
| Q |
320 |
tggtgtttgttcggtttttgcgaaagtactcaaagatggtcacatgaaggttcaaatagttgttgcttgggctatttcagaacttgcagcacatcatcca |
419 |
Q |
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| T |
8756715 |
tggtgtttgttctgtttttgcgaaaattcttaaagaaggtcctatgaaagttcaaggtgttgttgcttgggctgtttctgaacttgctgctaattatcct |
8756814 |
T |
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| Q |
420 |
aaatgtcaagatcattttgctcagaataatgctattcgtttgcttgttagtcatcttgcttttgaaaccattcaagaacatagtaagtattctatt |
515 |
Q |
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| T |
8756815 |
aaatgtcaggaactttttgctcagcataatattattaggttgcttgttggtcatttagcttttgaaactgttgaggaacatagtaagtatgctatt |
8756910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 320 - 505
Target Start/End: Complemental strand, 32031687 - 32031502
Alignment:
| Q |
320 |
tggtgtttgttcggtttttgcgaaagtactcaaagatggtcacatgaaggttcaaatagttgttgcttgggctatttcagaacttgcagcacatcatcca |
419 |
Q |
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| T |
32031687 |
tggtgtttgttctgttttcgcgaagattcttaaagaaggtcctatgaaagttcaagctgttgtagcttgggctgtttctgaacttgtttctaagtatcct |
32031588 |
T |
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| Q |
420 |
aaatgtcaagatcattttgctcagaataatgctattcgtttgcttgttagtcatcttgcttttgaaaccattcaagaacatagtaa |
505 |
Q |
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| T |
32031587 |
aaatgtcaagatgtttttgctcagcataatattgttaggttgcttgtgagtcacattgcttttgaaactgttcaagaacatagtaa |
32031502 |
T |
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