View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5101-Insertion-5 (Length: 396)
Name: NF5101-Insertion-5
Description: NF5101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5101-Insertion-5 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 163 - 396
Target Start/End: Original strand, 3800200 - 3800433
Alignment:
| Q |
163 |
tcaacatcaaatattccatgatctcgttttggcattgcaggaaatccaaccaaaaaacaagaaattcaaatctccccggatatacctatgatggacacaa |
262 |
Q |
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| T |
3800200 |
tcaacatcaaatatttcatgatctcgttttggcattgcaggaaatccaaccaaaaaacaagaaattcaaatctccccggatatacctatgatggacacaa |
3800299 |
T |
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| Q |
263 |
caaacatcccatggcgtggtgtagataagatcttatttgataatatggtgcaagagatgcaaactttaaataattttggagaatggtggctttgcaacac |
362 |
Q |
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| T |
3800300 |
caaacatcccatggcgtggcgtagataagatcttatttgataatatggtgcaagagatgcaaactttaaataattttggagaatggtggctttgcaacac |
3800399 |
T |
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| Q |
363 |
tacttgtgatcttgagcctggtgtattttccata |
396 |
Q |
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| T |
3800400 |
tacttgtgatcttgagcctggtgtattttccata |
3800433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 179 - 396
Target Start/End: Complemental strand, 3789888 - 3789674
Alignment:
| Q |
179 |
catgatctcgttttggcattgcaggaaatccaaccaaaaaacaagaaattcaaatctccccggatatacctatgatggacacaacaaacatcccatggcg |
278 |
Q |
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| T |
3789888 |
catgatctccttttcgcattgtaggaaatcccaccaaaaaacaagaaattcaaatctcccctgatatacctatgatgaacacaacaaacttcccatggcg |
3789789 |
T |
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| Q |
279 |
tggtgtagataagatcttatttgataatatggtgcaagagatgcaaactttaaataattttggagaatggtggctttgcaacactacttgtgatcttgag |
378 |
Q |
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| T |
3789788 |
cggcgtagataagatcttctttgatcattttgtgcaagagatacaaactata---aattttggagaatggtggctttgcaacactacttgtgatcttgag |
3789692 |
T |
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| Q |
379 |
cctggtgtattttccata |
396 |
Q |
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| T |
3789691 |
cctggtgtattttccata |
3789674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 7 - 161
Target Start/End: Complemental strand, 44524007 - 44523853
Alignment:
| Q |
7 |
atatctctttataccatgtttattaccgttggttattcaacatatatatgtaagtgtaacatgtactttagtgaaattagtggacataatatacaaacct |
106 |
Q |
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| T |
44524007 |
atatctctttatatcatgtttattaccgttggttattcgacatatatatgtaagtgtaacatgtactttagagacatcagtggacataatatacaaacct |
44523908 |
T |
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| Q |
107 |
gattacattccagccactgtccattgttcatatcttatttttattttcattagag |
161 |
Q |
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| T |
44523907 |
gattacattccagccactgtccattgttcatatcttatttttattttcattagag |
44523853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 7 - 158
Target Start/End: Original strand, 41322113 - 41322264
Alignment:
| Q |
7 |
atatctctttataccatgtttattaccgttggttattcaacatatatatgtaagtgtaacatgtactttagtgaaattagtggacataatatacaaacct |
106 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||| ||||||||||||||||| |
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| T |
41322113 |
atatctctttatatcatgtttattaccgttggttattcaacatatatatgtaagtgtaacatgtactttagagatatcagtgaacataatatacaaacct |
41322212 |
T |
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| Q |
107 |
gattacattccagccactgtccattgttcatatcttatttttattttcatta |
158 |
Q |
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| T |
41322213 |
gattacattccagccactgtccattgttcatatcttatttttattttcatta |
41322264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 70 - 160
Target Start/End: Original strand, 37726150 - 37726240
Alignment:
| Q |
70 |
tactttagtgaaattagtggacataatatacaaacctgattacattccagccactgtccattgttcatatcttatttttattttcattaga |
160 |
Q |
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| T |
37726150 |
tactttagagatatcagtggacataatatacaaaccagattacattctagccactgtccattgttcatatcatatttttattttcattaga |
37726240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 61 - 159
Target Start/End: Complemental strand, 12503300 - 12503202
Alignment:
| Q |
61 |
tgtaacatgtactttagtgaaattagtggacataatatacaaacctgattacattccagccactgtccattgttcatatcttatttttattttcattag |
159 |
Q |
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| T |
12503300 |
tgtaacatgtactgtagagagattagtggacataatatacaaaccagattacattctagctacagtccattgtccatatcatatttttactttcattag |
12503202 |
T |
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