View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5101_high_3 (Length: 421)

Name: NF5101_high_3
Description: NF5101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5101_high_3
NF5101_high_3
[»] chr1 (1 HSPs)
chr1 (13-403)||(34834205-34834586)


Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 13 - 403
Target Start/End: Complemental strand, 34834586 - 34834205
Alignment:
Q  13 aatattaaagaaaaacagtacaaaattcatgtggaccaccacaatagttcattagtttgtaccgttaaacttgatattaaagacaatatttattaatttt 112  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||        |||||||||||||||||||||||||||||||||||||||||||    
T  34834586 aatattaaagaaaaacagtacaaaattcatgtggaccaccactatagtt--------tgtaccgttaaacttgatattaaagacaatatttattaatttt 34834495  T
Q  113 cttttaattataccctcatttaacatgttagttcacctaactatactagagtactactccttttaactatttcaattaatataacagatattacttgaat 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  34834494 cttttaattataccctcatttaacatgttagttcacctaactatactagagtactactacttttaactatttcaattaatataacagatattacttgaat 34834395  T
Q  213 gacaattatgtataacaagacaacgtgagtacaaagagtattctaaaatataggtatacacatatttttataacataaggtatacgtataagactaatta 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34834394 gacaattatgtataacaagacaacgtgagtacaaagagtattctaaaatataggtatacacatatttttataacataaggtatacgtataagactaatta 34834295  T
Q  313 agaaatagatgcatctaatcttctctcnnnnnnnnnnnnnnncaaatagatgcatctaatctaacaaacaatttctatttatacgtaaatg 403  Q
    |||||||||||||||||||||||||||                ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34834294 agaaatagatgcatctaatcttctctcaaaaaaaaataaaaa-aaatagatgcatctaatctaacaaacaatttctatttatacgtaaatg 34834205  T

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