View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5101_high_4 (Length: 378)
Name: NF5101_high_4
Description: NF5101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5101_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 6512540 - 6512904
Alignment:
| Q |
1 |
atgaaagttgatcttcaaaatctaatagaaaaattgggtagtcaaaaaggataacgaaaagcttaactgaagcatgcaaattgatttggactaaactgct |
100 |
Q |
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| T |
6512540 |
atgaaagttgatcttcaaaatctaatagaaaaattgggtagtcaaaaaggataacgaaaagcttaactgaagcatgcaaattgatttggactaaactgct |
6512639 |
T |
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| Q |
101 |
ccacaaaatcaaatatctactggccacacttttattgattcacatctcttttattactattattatactagtatttccctatttttaatctctttaaaat |
200 |
Q |
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| T |
6512640 |
ccacaaaatcaaatatctactggccacacttttattgattcacatctcttttattac---tattatactagtatttccctatttttaatctctttaaaat |
6512736 |
T |
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| Q |
201 |
----nnnnnnnccattccatacggcattggaaataggatgtagtaaatcatgtcaaaagggtcaagccgttttattgtttttagcacatatatctgctgg |
296 |
Q |
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| T |
6512737 |
aaaaataaaaaacattccatacggcattggaaataggatgtcgtaaatcatgtcaaaagggtcaagccgttttattgtttttagcacatatatctgctgg |
6512836 |
T |
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| Q |
297 |
tgtcaccattgattttccgataatattcttaaatttaaaattatgttcgaagtacaacatgaattatg |
364 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
6512837 |
tgtcaccattgattttccgataatattcttaagtttaaaattatgttcgaagtacaacatgaattatg |
6512904 |
T |
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