View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5101_low_1 (Length: 430)
Name: NF5101_low_1
Description: NF5101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5101_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 18 - 420
Target Start/End: Original strand, 17403614 - 17404016
Alignment:
| Q |
18 |
gtagtttccattcctccttgctttagcttctctgtcagtctgcacatcaacaattaggtaagtgttacaatacatgattaaaaaccagctctatgatttt |
117 |
Q |
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| T |
17403614 |
gtagtttccattcctccttgctttagcttctctgtcagtctgcacatcaacaattaggtaagtgttacaatacatgattaaaaaccagctctatgatttt |
17403713 |
T |
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| Q |
118 |
cttttgttctatttcatctcctaatcaagagttaatatcaaaatcagatttatgaaacaatcagcataatatatgcaacctacgagataaactttcacct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17403714 |
cttttgttctatttcatctcctaatcaagagttaatatcaaaatcaaatttatgaaacaatcagcataatatatgcaacctacgagataaactttcacct |
17403813 |
T |
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| Q |
218 |
tcctggaaatattagacgcacttatgttcaattctgtataaggctgggaaagattttaatttaatgatatgctatgtccaattttctnnnnnnntaacaa |
317 |
Q |
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| T |
17403814 |
tcctggaaatattagacgcacttatgttcaattctgtataaggctgggaaagattttaatttaatgatatgctatgtccaattttctaaaaaaataacaa |
17403913 |
T |
|
| Q |
318 |
catagtccaagtttttcaaatttagtaatttaaacttcggaactatgataaatactcttcaccnnnnnnngttaggtgatatgtttgtgtacctttgtga |
417 |
Q |
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| T |
17403914 |
cataatccaagtttttcaaatttagtaatttaaacttcggaactatgataaatactcttcaccaaaaaaagttaggtgatatgcttgtgtacctttgtga |
17404013 |
T |
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| Q |
418 |
tga |
420 |
Q |
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||| |
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| T |
17404014 |
tga |
17404016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 17397647 - 17397693
Alignment:
| Q |
18 |
gtagtttccattcctccttgctttagcttctctgtcagtctgcacat |
64 |
Q |
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||||||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
17397647 |
gtagtttccattcctccttgcttcagcttctctatcagtctgcacat |
17397693 |
T |
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