View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5101_low_2 (Length: 427)
Name: NF5101_low_2
Description: NF5101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5101_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 18 - 424
Target Start/End: Complemental strand, 3418272 - 3417867
Alignment:
| Q |
18 |
aattcaatataggttacagggttcaattttatcaaaactcataagtttgatatgaacatgtttccaattttctagaaatcacgatgccgctgaaagaata |
117 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3418272 |
aattcaatctaggttacagggttcaattttatcaaaactcataagtttgatatgaacatgtttccaattttctagaaatcacgatgccgctgaaagaata |
3418173 |
T |
|
| Q |
118 |
aattcataaatcaatcaagatagggctgattttgcttttctaaatacatgtgcctccctccgtttcatcttaataatccattggtatcaacacatatata |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
3418172 |
aattcataaatcaatcaagatagggctgattttgcttttctaaatacatgtgcctacctccgtttcatcttaataatccattcgtatcaacacatatata |
3418073 |
T |
|
| Q |
218 |
tttgtgactaaaattccccaacgtgtattcaactactgagataattactccattaaaattcaatatttgggagcttttcttgtaagatctattgaccaat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3418072 |
tttgtgactaaaattccccaacgtgtattcaactactgagataattactccattaaaattcaatatttgggagcttttcttgtaagatctattgaccaat |
3417973 |
T |
|
| Q |
318 |
caatcaatgtatatatataaagtttgaaagnnnnnnnnnnnnacatcaattttggattacggattcacatcaattctggatttgttgttcacatagaata |
417 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3417972 |
caatcaatgtatatatataaagtttaaaag-tttttttttttacatcaattttggattacggattcacatctattctggatttgttgttcacatagaata |
3417874 |
T |
|
| Q |
418 |
atctacc |
424 |
Q |
| |
|
| ||||| |
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|
| T |
3417873 |
aactacc |
3417867 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 18 - 347
Target Start/End: Original strand, 19067834 - 19068163
Alignment:
| Q |
18 |
aattcaatataggttacagggttcaattttatcaaaactcataagtttgatatgaacatgtttccaattttctagaaatcacgatgccgctgaaagaata |
117 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19067834 |
aatttaatctaggttacagggttcaattttatcaaaactcataagtttgatatgaacatgtttccaattttctagaaatcacgatgccgctgaaagaata |
19067933 |
T |
|
| Q |
118 |
aattcataaatcaatcaagatagggctgattttgcttttctaaatacatgtgcctccctccgtttcatcttaataatccattggtatcaacacatatata |
217 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19067934 |
aattcataaatcaatcaagatagagctgattttgcttttctaaatacatgtgtctacctccgtttcatcttaataatccattggtatcaacacatatata |
19068033 |
T |
|
| Q |
218 |
tttgtgactaaaattccccaacgtgtattcaactactgagataattactccattaaaattcaatatttgggagcttttcttgtaagatctattgaccaat |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19068034 |
tttgtgactaaaattccccaacgtgtattcaaccattgagataattactccattaaaattcaatatttgggagcttttcttgtaagatctattgaccaat |
19068133 |
T |
|
| Q |
318 |
caatcaatgtatatatataaagtttgaaag |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
19068134 |
caatcaatgtatatatataaagtttgaaag |
19068163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 347
Target Start/End: Complemental strand, 34309085 - 34308758
Alignment:
| Q |
18 |
aattcaatataggttacagggttcaattttatcaaaactcataagtttgatatgaacatgtttccaattttctagaaatcacgatgccgctgaaagaata |
117 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34309085 |
aatttaatctaggttacagggttcaattttattaaaactcataagtttgatatgaacatgtttccaattttctagaaatcacgatgccgctgaaagaata |
34308986 |
T |
|
| Q |
118 |
aattcataaatcaatcaagatagggctgattttgcttttctaaatacatgtgcctccctccgtttcatcttaataatccattggtatcaacacatatata |
217 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
34308985 |
aattcataaatcaattaagatagagctgattttgcttttctaaatacatgtgcctacctccgtttcatcttaataatccattggtatcaacgc--atata |
34308888 |
T |
|
| Q |
218 |
tttgtgactaaaattccccaacgtgtattcaactactgagataattactccattaaaattcaatatttgggagcttttcttgtaagatctattgaccaat |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
34308887 |
tttgtgactaaaattccccaacgtgtattcaaccactgagataattactccattaaaattcaatatttgagagcttttcttgtaagatctattgaccaat |
34308788 |
T |
|
| Q |
318 |
caatcaatgtatatatataaagtttgaaag |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
34308787 |
caatcaatgtatatatataaagtttgaaag |
34308758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 347
Target Start/End: Complemental strand, 49090461 - 49090134
Alignment:
| Q |
18 |
aattcaatataggttacagggttcaattttatcaaaactcataagtttgatatgaacatgtttccaattttctagaaatcacgatgccgctgaaagaata |
117 |
Q |
| |
|
||||| || ||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
49090461 |
aattcgatctaggttacaaggttcaattttatcaaaactcataaatttgatacgaacatgtttccaattttctagaaatcatgatgccgctgaaagaata |
49090362 |
T |
|
| Q |
118 |
aattcataaatcaatcaagatagggctgattttgcttttctaaatacatgtgcctccctccgtttcatcttaataatccattggtatcaacacatatata |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
49090361 |
aattcataaatcaatcaagatagggctgattttgcttttctaaatacatgtgcctacctccgtttcatcttaataatccattgatatcaacacatatata |
49090262 |
T |
|
| Q |
218 |
tttgtgactaaaattccccaacgtgtattcaactactgagataattactccattaaaattcaatatttgggagcttttcttgtaagatctattgaccaat |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
49090261 |
tttgtgactaaaattccccaacgtgtattcaaccactgggacaattactccattaaaattcaatatttgggagcttttcttgtaagatctatggaccaat |
49090162 |
T |
|
| Q |
318 |
caatcaatgtatatatataaagtttgaaag |
347 |
Q |
| |
|
||||||| ||||||||||||||||||||| |
|
|
| T |
49090161 |
caatcaa--tatatatataaagtttgaaag |
49090134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 165 - 280
Target Start/End: Complemental strand, 46917599 - 46917486
Alignment:
| Q |
165 |
atgtgcctccctccgtttcatcttaataatccattggtatcaacacatatatatttgtgactaaaattccccaacgtgtattcaactactgagataatta |
264 |
Q |
| |
|
|||||||| |||| |||||||||| |||||||||| |||||| || ||||||||||||| |||||||||||||| |||||||||| ||||||| |||| |
|
|
| T |
46917599 |
atgtgcctgcctctgtttcatctttataatccatttgtatcatca--tatatatttgtgattaaaattccccaacatgtattcaaccactgagacaattg |
46917502 |
T |
|
| Q |
265 |
ctccattaaaattcaa |
280 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
46917501 |
ttccattgaaattcaa |
46917486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 77 - 162
Target Start/End: Complemental strand, 46917727 - 46917643
Alignment:
| Q |
77 |
gtttccaattttctagaaatcacgatgccgctgaaagaataaattcataaatcaatc-aagatagggctgattttgcttttctaaat |
162 |
Q |
| |
|
|||||||||||||||||||||| ||||| | ||||| ||||||||||||||||||| |||||| || |||||||||||||||||| |
|
|
| T |
46917727 |
gtttccaattttctagaaatcatgatgctg-tgaaaacataaattcataaatcaatcaaagata-tgccgattttgcttttctaaat |
46917643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 119 - 347
Target Start/End: Complemental strand, 4085669 - 4085441
Alignment:
| Q |
119 |
attcataaatcaatcaagatagggctgattttgcttttctaaatacatgtgcctccctccgtttcatcttaataatccattggtatcaacacatatatat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4085669 |
attcataaatcaatcaagatagggctgattttgcttttctaaatacatgtgcctacctccgtttcatcttaataatccattggtatcaacacatatatat |
4085570 |
T |
|
| Q |
219 |
ttgtgactaaaattccccaacgtgtattcaactactgagataattactccattaaaattcaatatttgggagcttttcttgtaagatctattgaccaatc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4085569 |
ttgtgactaaaattccccaacgtgtattcaaccactaagataattactccattaaaattcaatatttgggagcttttcttgtaagatctattgaccaatc |
4085470 |
T |
|
| Q |
319 |
aatcaatgtatatatataaagtttgaaag |
347 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
4085469 |
aatcaatgtatatatataaagtttgaaag |
4085441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 384 - 424
Target Start/End: Complemental strand, 4085429 - 4085389
Alignment:
| Q |
384 |
acatcaattctggatttgttgttcacatagaataatctacc |
424 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4085429 |
acatcaattctggatttgttgttcacatagaataaactacc |
4085389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 285
Target Start/End: Original strand, 41787203 - 41787278
Alignment:
| Q |
214 |
tatatttgt-gactaaaattccccaacgtgtatt---caactactgagataattactccattaaaattcaatattt |
285 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||| |||| ||||||||||||| |||||| |||||||| |||| |
|
|
| T |
41787203 |
tatatttgttgactaaaattccccaaagtgtattcaacaaccactgagataattattccattgaaattcaaaattt |
41787278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 180 - 280
Target Start/End: Original strand, 19654394 - 19654494
Alignment:
| Q |
180 |
tttcatcttaataatccattggtatcaacacatatatatttgtgactaaaattccccaacgtgtattcaactactgagataattactccattaaaattca |
279 |
Q |
| |
|
||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||| || |||| ||||| |||||| ||||||| |
|
|
| T |
19654394 |
tttcatctttataatccatttgtatgaacacatatatatttgtgattaaaattccccaacgtgtattcaaccaccgagacaattattccattgaaattca |
19654493 |
T |
|
| Q |
280 |
a |
280 |
Q |
| |
|
| |
|
|
| T |
19654494 |
a |
19654494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 382 - 418
Target Start/End: Original strand, 12345635 - 12345671
Alignment:
| Q |
382 |
tcacatcaattctggatttgttgttcacatagaataa |
418 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
12345635 |
tcacaacaattctggatttgttgttcacatagaataa |
12345671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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