View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5101_low_3 (Length: 421)
Name: NF5101_low_3
Description: NF5101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5101_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 13 - 403
Target Start/End: Complemental strand, 34834586 - 34834205
Alignment:
| Q |
13 |
aatattaaagaaaaacagtacaaaattcatgtggaccaccacaatagttcattagtttgtaccgttaaacttgatattaaagacaatatttattaatttt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34834586 |
aatattaaagaaaaacagtacaaaattcatgtggaccaccactatagtt--------tgtaccgttaaacttgatattaaagacaatatttattaatttt |
34834495 |
T |
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| Q |
113 |
cttttaattataccctcatttaacatgttagttcacctaactatactagagtactactccttttaactatttcaattaatataacagatattacttgaat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
34834494 |
cttttaattataccctcatttaacatgttagttcacctaactatactagagtactactacttttaactatttcaattaatataacagatattacttgaat |
34834395 |
T |
|
| Q |
213 |
gacaattatgtataacaagacaacgtgagtacaaagagtattctaaaatataggtatacacatatttttataacataaggtatacgtataagactaatta |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34834394 |
gacaattatgtataacaagacaacgtgagtacaaagagtattctaaaatataggtatacacatatttttataacataaggtatacgtataagactaatta |
34834295 |
T |
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| Q |
313 |
agaaatagatgcatctaatcttctctcnnnnnnnnnnnnnnncaaatagatgcatctaatctaacaaacaatttctatttatacgtaaatg |
403 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34834294 |
agaaatagatgcatctaatcttctctcaaaaaaaaataaaaa-aaatagatgcatctaatctaacaaacaatttctatttatacgtaaatg |
34834205 |
T |
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